Variant report

Variant	rs1433039
Chromosome Location	chr5:145060737-145060738
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:142355674..142357235-chr5:145059140..145061602,2	K562	blood:
2	chr5:145059333..145062301-chr5:145065267..145067260,2	K562	blood:

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10053951	0.87[AMR][1000 genomes]
rs10054020	0.87[AMR][1000 genomes]
rs10062505	0.83[AMR][1000 genomes]
rs10064040	0.94[ASN][1000 genomes]
rs10477284	0.87[AMR][1000 genomes]
rs10515552	0.97[ASN][1000 genomes]
rs10515554	0.97[ASN][1000 genomes]
rs10515557	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11948853	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13435950	0.88[AMR][1000 genomes]
rs1347160	0.91[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1347161	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1368435	0.80[AMR][1000 genomes]
rs1433035	0.86[ASN][1000 genomes]
rs1529705	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1560685	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1594676	0.82[CEU][hapmap];0.92[CHB][hapmap]
rs17103568	0.97[ASN][1000 genomes]
rs17103583	0.91[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs17103584	0.97[ASN][1000 genomes]
rs17103587	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17103591	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17103595	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17103600	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17103601	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17103610	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17103621	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17103624	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17103632	0.89[ASN][1000 genomes]
rs17103639	0.81[ASN][1000 genomes]
rs1865011	0.82[AMR][1000 genomes]
rs1982071	0.81[AMR][1000 genomes]
rs2195938	0.84[AMR][1000 genomes]
rs2195939	0.86[ASN][1000 genomes]
rs28429609	0.85[AMR][1000 genomes]
rs4339405	0.82[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];0.80[MEX][hapmap]
rs4509079	0.91[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs57531568	0.86[ASN][1000 genomes]
rs60101315	0.82[AMR][1000 genomes]
rs61119648	0.90[ASN][1000 genomes]
rs61352712	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62392286	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs62392290	0.84[AMR][1000 genomes]
rs62392303	0.92[ASN][1000 genomes]
rs62392311	0.92[ASN][1000 genomes]
rs62392313	0.89[ASN][1000 genomes]
rs62394213	0.82[AMR][1000 genomes]
rs6580381	0.84[AMR][1000 genomes]
rs6862768	0.86[ASN][1000 genomes]
rs6872440	0.81[AMR][1000 genomes]
rs6876768	0.81[AMR][1000 genomes]
rs6876787	0.81[AMR][1000 genomes]
rs6881485	0.85[AMR][1000 genomes]
rs6883434	0.84[AMR][1000 genomes]
rs6884613	0.88[AMR][1000 genomes]
rs6892552	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs73302055	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73313747	0.84[AMR][1000 genomes]
rs73313748	0.84[AMR][1000 genomes]
rs73313774	0.87[AMR][1000 genomes]
rs73794410	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73794411	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7449409	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7711332	0.90[AMR][1000 genomes]
rs7720071	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7722597	0.97[ASN][1000 genomes]
rs7733723	0.90[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9324986	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs956178	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883004	chr5:144945649-145068001	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv883005	chr5:144945649-145107586	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:145058800-145061000	Weak transcription	Fetal Intestine Small	intestine
2	chr5:145059800-145062400	Enhancers	Rectal Smooth Muscle	rectum
3	chr5:145060000-145061200	Enhancers	Fetal Heart	heart
4	chr5:145060200-145061000	Active TSS	Stomach Smooth Muscle	stomach
5	chr5:145060200-145061600	Enhancers	Stomach Mucosa	stomach
6	chr5:145060200-145062000	Enhancers	HepG2	liver
7	chr5:145060400-145060800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr5:145060400-145060800	Enhancers	Aorta	Aorta
9	chr5:145060400-145060800	Enhancers	Fetal Muscle Leg	muscle
10	chr5:145060400-145060800	Enhancers	Gastric	stomach
11	chr5:145060400-145061400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr5:145060400-145061400	Enhancers	Liver	Liver
13	chr5:145060400-145061400	Enhancers	Fetal Lung	lung
14	chr5:145060400-145061400	Enhancers	Pancreas	Pancrea
15	chr5:145060400-145062200	Enhancers	Ovary	ovary
16	chr5:145060400-145062400	Enhancers	Fetal Stomach	stomach
17	chr5:145060400-145062400	Enhancers	Left Ventricle	heart
18	chr5:145060400-145062600	Enhancers	Adipose Nuclei	Adipose
19	chr5:145060400-145062600	Enhancers	Osteobl	bone
20	chr5:145060600-145061000	Flanking Active TSS	Colon Smooth Muscle	Colon
21	chr5:145060600-145061200	Enhancers	Pancreatic Islets	Pancreatic Islet
22	chr5:145060600-145061400	Enhancers	Duodenum Smooth Muscle	Duodenum
23	chr5:145060600-145061600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr5:145060600-145061600	Enhancers	Fetal Intestine Large	intestine

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