Variant report

Variant	rs17103624
Chromosome Location	chr5:145068303-145068304
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:145050661..145052911-chr5:145067099..145069500,2	K562	blood:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10064040	0.90[ASN][1000 genomes]
rs10515552	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10515554	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10515557	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11948853	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1347160	0.94[ASN][1000 genomes]
rs1433035	0.83[ASN][1000 genomes]
rs1433039	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1529705	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1560685	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1594676	0.92[CHB][hapmap]
rs17103568	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs17103584	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs17103587	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17103591	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17103595	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17103600	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17103601	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17103610	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17103621	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17103632	0.92[ASN][1000 genomes]
rs17103639	0.84[ASN][1000 genomes]
rs1865011	0.81[AMR][1000 genomes]
rs1982070	0.90[AMR][1000 genomes]
rs2195938	0.87[AMR][1000 genomes]
rs2195939	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4339405	0.92[CHB][hapmap]
rs57531568	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs60101315	0.81[AMR][1000 genomes]
rs61119648	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs61352712	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62392286	0.84[ASN][1000 genomes]
rs62392301	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs62392303	0.95[ASN][1000 genomes]
rs62392311	0.95[ASN][1000 genomes]
rs62392313	0.92[ASN][1000 genomes]
rs62394213	0.81[AMR][1000 genomes]
rs6862768	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6872440	0.82[AMR][1000 genomes]
rs6876768	0.82[AMR][1000 genomes]
rs6876787	0.82[AMR][1000 genomes]
rs6884613	0.81[ASN][1000 genomes]
rs6892552	0.83[ASN][1000 genomes]
rs73302055	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73313747	0.87[AMR][1000 genomes]
rs73313748	0.87[AMR][1000 genomes]
rs73794410	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73794411	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7449409	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7720071	0.87[ASN][1000 genomes]
rs7722597	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7733723	0.94[ASN][1000 genomes]
rs9324986	0.97[ASN][1000 genomes]
rs956178	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883005	chr5:144945649-145107586	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv462474	chr5:145068001-145143775	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv599934	chr5:145068001-145143775	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:145060800-145074600	Weak transcription	Aorta	Aorta
2	chr5:145060800-145089600	Weak transcription	Gastric	stomach
3	chr5:145061400-145076800	Weak transcription	Pancreas	Pancrea
4	chr5:145062000-145069200	Weak transcription	HepG2	liver
5	chr5:145062400-145071800	Weak transcription	Rectal Smooth Muscle	rectum
6	chr5:145066600-145084200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr5:145067600-145070600	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr5:145067800-145068400	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr5:145068000-145070400	Enhancers	Brain Substantia Nigra	brain
10	chr5:145068200-145069400	Enhancers	Brain Angular Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links