Variant report

Variant	rs62392311
Chromosome Location	chr5:145075984-145075985
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:145075981..145078499-chr5:145212662..145215642,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000186314	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10056068	0.80[EUR][1000 genomes]
rs10064040	0.86[ASN][1000 genomes]
rs10515552	0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10515554	0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10515557	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11948853	0.95[ASN][1000 genomes]
rs1347160	0.89[ASN][1000 genomes]
rs1433039	0.92[ASN][1000 genomes]
rs1529705	0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1560685	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs17103502	0.82[AMR][1000 genomes]
rs17103568	0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17103584	0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17103587	0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs17103591	0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs17103595	0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs17103600	0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs17103601	0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs17103610	0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs17103621	0.95[ASN][1000 genomes]
rs17103624	0.95[ASN][1000 genomes]
rs17103632	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17103639	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17103640	0.90[AFR][1000 genomes]
rs2116816	0.81[AMR][1000 genomes]
rs2195939	0.84[AMR][1000 genomes]
rs57531568	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs61119648	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs61352712	0.91[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs61369168	0.82[AMR][1000 genomes]
rs62392303	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62392312	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62392313	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6862768	0.86[AMR][1000 genomes]
rs73302055	0.95[ASN][1000 genomes]
rs73794410	0.95[ASN][1000 genomes]
rs73794411	0.95[ASN][1000 genomes]
rs7449409	0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7720071	0.83[ASN][1000 genomes]
rs7722597	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7733723	0.89[ASN][1000 genomes]
rs9324986	0.92[ASN][1000 genomes]
rs953408	0.82[AMR][1000 genomes]
rs956178	0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883005	chr5:144945649-145107586	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv462474	chr5:145068001-145143775	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv599934	chr5:145068001-145143775	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:145060800-145089600	Weak transcription	Gastric	stomach
2	chr5:145061400-145076800	Weak transcription	Pancreas	Pancrea
3	chr5:145066600-145084200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr5:145068600-145106200	Weak transcription	Duodenum Mucosa	Duodenum
5	chr5:145069400-145076800	Weak transcription	Brain Angular Gyrus	brain
6	chr5:145075400-145090200	Weak transcription	Aorta	Aorta

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