Variant report

Variant	rs57531568
Chromosome Location	chr5:145071346-145071347
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10064040	0.80[ASN][1000 genomes]
rs10515552	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10515554	0.98[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10515557	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11948853	0.89[ASN][1000 genomes]
rs1347160	0.83[ASN][1000 genomes]
rs1422651	0.88[AMR][1000 genomes]
rs1433030	0.88[AMR][1000 genomes]
rs1433032	0.88[AMR][1000 genomes]
rs1433035	0.80[AMR][1000 genomes]
rs1433039	0.86[ASN][1000 genomes]
rs1529705	0.98[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1529709	0.88[AMR][1000 genomes]
rs1560685	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1594674	0.86[AMR][1000 genomes]
rs1594675	0.86[AMR][1000 genomes]
rs17103398	0.83[AMR][1000 genomes]
rs17103431	0.88[AMR][1000 genomes]
rs17103444	0.88[AMR][1000 genomes]
rs17103458	0.88[AMR][1000 genomes]
rs17103460	0.88[AMR][1000 genomes]
rs17103471	0.88[AMR][1000 genomes]
rs17103502	0.91[AMR][1000 genomes]
rs17103568	0.98[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs17103584	0.98[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs17103587	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17103591	0.98[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17103595	0.98[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17103600	0.98[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17103601	0.98[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17103610	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17103621	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17103624	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17103632	0.88[ASN][1000 genomes]
rs17103639	0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs17103640	0.92[EUR][1000 genomes]
rs1897582	0.80[AMR][1000 genomes]
rs2116816	0.89[AMR][1000 genomes]
rs2195939	0.93[AMR][1000 genomes]
rs4339405	0.80[AMR][1000 genomes]
rs4579305	0.83[AMR][1000 genomes]
rs57427089	0.88[AMR][1000 genomes]
rs59004463	0.88[AMR][1000 genomes]
rs60633209	0.88[AMR][1000 genomes]
rs61119648	0.95[AMR][1000 genomes]
rs61352712	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs61369168	0.91[AMR][1000 genomes]
rs62392303	0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs62392311	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs62392312	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs62392313	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs62394188	0.80[AMR][1000 genomes]
rs62394217	0.80[AMR][1000 genomes]
rs62394219	0.85[AMR][1000 genomes]
rs6862768	0.95[AMR][1000 genomes]
rs6863005	0.80[AMR][1000 genomes]
rs6879415	0.88[AMR][1000 genomes]
rs6880648	0.88[AMR][1000 genomes]
rs6883831	0.85[AMR][1000 genomes]
rs73302055	0.89[ASN][1000 genomes]
rs73794410	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs73794411	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7449409	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7722597	0.95[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7733723	0.83[ASN][1000 genomes]
rs9324986	0.86[ASN][1000 genomes]
rs953408	0.91[AMR][1000 genomes]
rs956178	0.98[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs964924	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883005	chr5:144945649-145107586	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv462474	chr5:145068001-145143775	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv599934	chr5:145068001-145143775	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:145060800-145074600	Weak transcription	Aorta	Aorta
2	chr5:145060800-145089600	Weak transcription	Gastric	stomach
3	chr5:145061400-145076800	Weak transcription	Pancreas	Pancrea
4	chr5:145062400-145071800	Weak transcription	Rectal Smooth Muscle	rectum
5	chr5:145066600-145084200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr5:145068600-145106200	Weak transcription	Duodenum Mucosa	Duodenum
7	chr5:145069400-145076800	Weak transcription	Brain Angular Gyrus	brain

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