Variant report

Variant	rs953408
Chromosome Location	chr5:144976808-144976809
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10062780	1.00[ASN][1000 genomes]
rs10515552	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10515554	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10515557	0.91[AMR][1000 genomes]
rs1422651	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1433030	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1433032	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1433035	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1529705	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1529709	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1560685	0.91[AMR][1000 genomes]
rs1594674	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1594675	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1594676	0.82[CEU][hapmap];0.83[CHB][hapmap]
rs17103398	0.91[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs17103431	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17103444	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17103458	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17103460	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17103471	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17103502	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17103568	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17103584	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17103587	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17103591	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17103595	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17103600	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17103601	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17103610	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1897582	0.82[AMR][1000 genomes]
rs1982070	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2116816	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2195938	0.97[EUR][1000 genomes]
rs2195939	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4339405	0.82[CEU][hapmap];0.83[CHB][hapmap];0.82[AMR][1000 genomes]
rs4579305	0.85[AMR][1000 genomes]
rs57427089	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57531568	0.91[AMR][1000 genomes]
rs59004463	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60633209	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61119648	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61352712	0.91[AMR][1000 genomes]
rs61369168	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62392303	0.81[AMR][1000 genomes]
rs62392311	0.82[AMR][1000 genomes]
rs62392312	0.82[AMR][1000 genomes]
rs62394188	0.88[AMR][1000 genomes]
rs62394197	0.81[AMR][1000 genomes]
rs62394217	0.82[AMR][1000 genomes]
rs62394219	0.86[AMR][1000 genomes]
rs6862768	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6863005	0.82[AMR][1000 genomes]
rs6879415	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6880648	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6883831	0.86[AMR][1000 genomes]
rs6892552	0.87[ASN][1000 genomes]
rs73313747	0.97[EUR][1000 genomes]
rs73313748	0.97[EUR][1000 genomes]
rs7449409	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7720071	0.82[ASN][1000 genomes]
rs7722597	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs956178	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs964922	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs964924	0.91[AMR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883004	chr5:144945649-145068001	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv883005	chr5:144945649-145107586	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:144968000-144989200	Weak transcription	Aorta	Aorta
2	chr5:144976000-144978000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr5:144976800-144977600	Enhancers	Brain Germinal Matrix	brain

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