Variant report

Variant	rs17103398
Chromosome Location	chr5:144945649-144945650
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10062780	0.83[ASN][1000 genomes]
rs10515552	0.84[AMR][1000 genomes]
rs10515554	0.84[AMR][1000 genomes]
rs10515557	0.83[AMR][1000 genomes]
rs1422651	0.95[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1433030	0.95[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1433032	0.95[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1529705	0.84[AMR][1000 genomes]
rs1529709	0.95[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1560685	0.83[AMR][1000 genomes]
rs1594674	0.93[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1594675	0.93[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1594676	0.82[CEU][hapmap]
rs17103431	0.95[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs17103444	0.95[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs17103458	0.95[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs17103460	0.95[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs17103471	0.95[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs17103502	0.91[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs17103568	0.84[AMR][1000 genomes]
rs17103584	0.84[AMR][1000 genomes]
rs17103587	0.84[AMR][1000 genomes]
rs17103591	0.84[AMR][1000 genomes]
rs17103595	0.84[AMR][1000 genomes]
rs17103600	0.84[AMR][1000 genomes]
rs17103601	0.84[AMR][1000 genomes]
rs17103610	0.84[AMR][1000 genomes]
rs1982070	0.83[ASN][1000 genomes]
rs2116816	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2195939	0.86[AMR][1000 genomes]
rs4339405	0.82[CEU][hapmap];0.90[GIH][hapmap];0.89[MEX][hapmap]
rs4579305	0.80[AMR][1000 genomes]
rs57217872	0.85[AMR][1000 genomes]
rs57427089	0.95[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs57531568	0.83[AMR][1000 genomes]
rs59004463	0.95[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs60633209	0.95[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs61119648	0.88[AMR][1000 genomes]
rs61352712	0.83[AMR][1000 genomes]
rs61369168	0.91[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs62394188	0.83[AMR][1000 genomes]
rs6862768	0.88[AMR][1000 genomes]
rs6879415	0.95[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6880648	0.95[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7449409	0.84[AMR][1000 genomes]
rs7722597	0.88[AMR][1000 genomes]
rs953408	0.91[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs956178	0.84[AMR][1000 genomes]
rs964922	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs964924	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883004	chr5:144945649-145068001	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv883005	chr5:144945649-145107586	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:144924000-144949000	Weak transcription	Aorta	Aorta
2	chr5:144943200-144947600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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