Variant report

Variant	rs1982070
Chromosome Location	chr5:144983757-144983758
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:94)

rs_ID	r²[population]
rs10036555	0.85[AMR][1000 genomes]
rs10062780	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10064198	0.84[AMR][1000 genomes]
rs10074155	0.84[AMR][1000 genomes]
rs10074645	0.85[AMR][1000 genomes]
rs10074797	0.81[AMR][1000 genomes]
rs10515552	1.00[EUR][1000 genomes]
rs10515554	1.00[EUR][1000 genomes]
rs11953390	0.85[AMR][1000 genomes]
rs13353880	0.85[AMR][1000 genomes]
rs13359453	0.81[AMR][1000 genomes]
rs13361864	0.84[AMR][1000 genomes]
rs1363555	0.81[AMR][1000 genomes]
rs1422651	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1433029	0.81[AMR][1000 genomes]
rs1433030	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1433031	0.81[AMR][1000 genomes]
rs1433032	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1433033	0.85[AMR][1000 genomes]
rs1433034	0.85[AMR][1000 genomes]
rs1433035	0.87[ASN][1000 genomes]
rs1529705	0.88[EUR][1000 genomes]
rs1529709	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1594673	0.84[AMR][1000 genomes]
rs1594674	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1594675	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17103398	0.83[ASN][1000 genomes]
rs17103424	0.81[AMR][1000 genomes]
rs17103425	0.80[AMR][1000 genomes]
rs17103431	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17103444	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17103458	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17103460	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17103471	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17103502	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17103568	1.00[EUR][1000 genomes]
rs17103584	1.00[EUR][1000 genomes]
rs17103587	0.94[EUR][1000 genomes]
rs17103591	0.94[EUR][1000 genomes]
rs17103595	0.88[EUR][1000 genomes]
rs17103600	0.88[EUR][1000 genomes]
rs17103601	0.88[EUR][1000 genomes]
rs17103610	0.88[EUR][1000 genomes]
rs17103621	0.90[AMR][1000 genomes]
rs17103624	0.90[AMR][1000 genomes]
rs1865005	0.81[AMR][1000 genomes]
rs1865011	0.84[AMR][1000 genomes]
rs1982071	0.80[AMR][1000 genomes]
rs2099326	0.81[AMR][1000 genomes]
rs2116816	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2195937	0.84[AMR][1000 genomes]
rs2195938	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2195939	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28429609	0.81[AMR][1000 genomes]
rs28883046	0.81[AMR][1000 genomes]
rs56839506	0.84[AMR][1000 genomes]
rs57226270	0.81[AMR][1000 genomes]
rs57427089	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59004463	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60101315	0.84[AMR][1000 genomes]
rs60633209	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61119648	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61369168	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62394190	0.84[AMR][1000 genomes]
rs62394193	0.81[AMR][1000 genomes]
rs62394194	0.81[AMR][1000 genomes]
rs62394213	0.84[AMR][1000 genomes]
rs62394216	0.81[AMR][1000 genomes]
rs6862768	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6872440	0.85[AMR][1000 genomes]
rs6876768	0.85[AMR][1000 genomes]
rs6876787	0.85[AMR][1000 genomes]
rs6879415	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6880648	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6881485	0.81[AMR][1000 genomes]
rs6884591	0.84[AMR][1000 genomes]
rs6889689	0.81[AMR][1000 genomes]
rs6892552	0.87[ASN][1000 genomes]
rs73311527	0.81[AMR][1000 genomes]
rs73313747	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73313748	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73794410	0.83[AMR][1000 genomes]
rs73794411	0.90[AMR][1000 genomes]
rs7449409	0.94[EUR][1000 genomes]
rs7712910	0.85[AMR][1000 genomes]
rs7720071	0.82[ASN][1000 genomes]
rs7722597	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs953408	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs953421	0.84[AMR][1000 genomes]
rs953422	0.84[AMR][1000 genomes]
rs956178	0.94[EUR][1000 genomes]
rs964922	0.83[ASN][1000 genomes]
rs964924	0.86[ASN][1000 genomes]
rs9885537	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883004	chr5:144945649-145068001	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv883005	chr5:144945649-145107586	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:144968000-144989200	Weak transcription	Aorta	Aorta
2	chr5:144979200-144989200	Weak transcription	Sigmoid Colon	Sigmoid Colon

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