Variant report

Variant	rs62394219
Chromosome Location	chr5:144998486-144998487
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 135 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:133)

rs_ID	r²[population]
rs10036555	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10053951	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10054020	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10062505	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10062531	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10062780	0.98[EUR][1000 genomes]
rs10064198	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10066886	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10074155	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10074645	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10074797	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10477284	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10515551	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10515552	0.86[AMR][1000 genomes]
rs10515554	0.86[AMR][1000 genomes]
rs10515557	0.85[AMR][1000 genomes]
rs11953390	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11957251	0.91[ASN][1000 genomes]
rs13353880	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13359453	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13361864	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13435950	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1347160	0.88[EUR][1000 genomes]
rs1347161	0.81[EUR][1000 genomes]
rs1363555	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1422651	0.83[AMR][1000 genomes]
rs1433029	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1433030	0.83[AMR][1000 genomes]
rs1433031	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1433032	0.83[AMR][1000 genomes]
rs1433033	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1433034	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1433035	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1529705	0.86[AMR][1000 genomes]
rs1529709	0.83[AMR][1000 genomes]
rs1560685	0.85[AMR][1000 genomes]
rs1594673	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1594674	0.82[AMR][1000 genomes]
rs1594675	0.82[AMR][1000 genomes]
rs17103424	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17103425	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17103431	0.83[AMR][1000 genomes]
rs17103444	0.83[AMR][1000 genomes]
rs17103458	0.83[AMR][1000 genomes]
rs17103460	0.83[AMR][1000 genomes]
rs17103471	0.83[AMR][1000 genomes]
rs17103502	0.86[AMR][1000 genomes]
rs17103568	0.86[AMR][1000 genomes]
rs17103583	0.88[EUR][1000 genomes]
rs17103584	0.86[AMR][1000 genomes]
rs17103587	0.86[AMR][1000 genomes]
rs17103591	0.86[AMR][1000 genomes]
rs17103595	0.86[AMR][1000 genomes]
rs17103600	0.86[AMR][1000 genomes]
rs17103601	0.86[AMR][1000 genomes]
rs17103610	0.86[AMR][1000 genomes]
rs1865005	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1865009	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1865010	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1865011	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1897582	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1982071	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2099326	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2116816	0.85[AMR][1000 genomes]
rs2195937	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2195938	0.89[ASN][1000 genomes]
rs2195939	0.91[AMR][1000 genomes]
rs28429609	0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28883046	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35784567	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4339405	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4509079	0.81[EUR][1000 genomes]
rs4579305	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4598024	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56839506	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57217872	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57226270	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57427089	0.83[AMR][1000 genomes]
rs57531568	0.85[AMR][1000 genomes]
rs59004463	0.83[AMR][1000 genomes]
rs59699846	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60101315	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60633209	0.83[AMR][1000 genomes]
rs61119648	0.90[AMR][1000 genomes]
rs61352712	0.85[AMR][1000 genomes]
rs61369168	0.86[AMR][1000 genomes]
rs62392286	0.92[EUR][1000 genomes]
rs62392290	0.86[EUR][1000 genomes]
rs62392708	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62394188	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62394190	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62394192	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62394193	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62394194	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62394195	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62394196	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62394197	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62394213	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62394216	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62394217	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6580381	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6859315	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6862768	0.90[AMR][1000 genomes]
rs6863005	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6872440	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6875249	0.96[EUR][1000 genomes]
rs6876768	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6876787	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6879415	0.83[AMR][1000 genomes]
rs6880648	0.83[AMR][1000 genomes]
rs6881485	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6883434	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6883831	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6884591	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6889689	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6892552	0.96[EUR][1000 genomes]
rs73311527	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73313747	0.89[ASN][1000 genomes]
rs73313748	0.89[ASN][1000 genomes]
rs73313774	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7449409	0.86[AMR][1000 genomes]
rs7711332	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7712910	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7720071	0.92[EUR][1000 genomes]
rs7722597	0.90[AMR][1000 genomes]
rs7733723	0.86[EUR][1000 genomes]
rs9324986	0.81[EUR][1000 genomes]
rs953408	0.86[AMR][1000 genomes]
rs953421	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs953422	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs956178	0.86[AMR][1000 genomes]
rs964923	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9885537	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883004	chr5:144945649-145068001	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv883005	chr5:144945649-145107586	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:144997400-145003200	Weak transcription	Ovary	ovary
2	chr5:144998200-144998600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
3	chr5:144998200-144999200	ZNF genes & repeats	Fetal Stomach	stomach

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