Variant report

Variant	rs62392286
Chromosome Location	chr5:145030892-145030893
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 125 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:122)

rs_ID	r²[population]
rs10036555	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10053951	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10054020	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10062505	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10062531	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10062780	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10064040	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10064198	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10066886	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10074155	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10074645	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10074797	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10477284	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10515551	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10515552	0.90[ASN][1000 genomes]
rs10515554	0.90[ASN][1000 genomes]
rs10515557	0.84[ASN][1000 genomes]
rs11948853	0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11953390	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13353880	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13359453	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13361864	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13435950	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1347160	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1347161	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1363555	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1368435	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1433029	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1433031	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1433033	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1433034	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1433035	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1433039	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1529705	0.87[ASN][1000 genomes]
rs1560685	0.84[ASN][1000 genomes]
rs1594673	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17103424	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17103425	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17103568	0.90[ASN][1000 genomes]
rs17103583	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17103584	0.90[ASN][1000 genomes]
rs17103587	0.87[ASN][1000 genomes]
rs17103591	0.87[ASN][1000 genomes]
rs17103595	0.87[ASN][1000 genomes]
rs17103600	0.87[ASN][1000 genomes]
rs17103601	0.87[ASN][1000 genomes]
rs17103610	0.87[ASN][1000 genomes]
rs17103621	0.84[ASN][1000 genomes]
rs17103624	0.84[ASN][1000 genomes]
rs1865005	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1865009	0.92[EUR][1000 genomes]
rs1865010	0.92[EUR][1000 genomes]
rs1865011	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1897582	0.92[EUR][1000 genomes]
rs1982071	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2099326	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2195937	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2195938	0.82[AMR][1000 genomes]
rs2195939	0.92[ASN][1000 genomes]
rs28429609	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28883046	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35784567	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4339405	0.92[EUR][1000 genomes]
rs4509079	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4579305	0.92[EUR][1000 genomes]
rs4598024	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56839506	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs57217872	0.81[EUR][1000 genomes]
rs57226270	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs59699846	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs60101315	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61119648	0.97[ASN][1000 genomes]
rs62392290	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62392301	0.82[AMR][1000 genomes]
rs62392708	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62394188	0.90[EUR][1000 genomes]
rs62394190	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62394192	0.92[EUR][1000 genomes]
rs62394193	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62394194	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62394195	0.92[EUR][1000 genomes]
rs62394196	0.92[EUR][1000 genomes]
rs62394197	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62394213	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62394216	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62394217	0.92[EUR][1000 genomes]
rs62394219	0.92[EUR][1000 genomes]
rs6580381	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6859315	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6862768	0.92[ASN][1000 genomes]
rs6863005	0.92[EUR][1000 genomes]
rs6872440	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6875249	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6876768	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6876787	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6881485	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6883434	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6883831	0.92[EUR][1000 genomes]
rs6884591	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6884613	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6889689	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6892552	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73302055	0.84[ASN][1000 genomes]
rs73311527	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73313747	0.82[AMR][1000 genomes]
rs73313748	0.82[AMR][1000 genomes]
rs73313774	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73794410	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs73794411	0.84[ASN][1000 genomes]
rs7449409	0.87[ASN][1000 genomes]
rs7711332	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7712910	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7720071	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7722597	0.90[ASN][1000 genomes]
rs7733723	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9324986	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9324988	0.83[AMR][1000 genomes]
rs953421	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs953422	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs956178	0.87[ASN][1000 genomes]
rs964923	0.81[EUR][1000 genomes]
rs9885537	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883004	chr5:144945649-145068001	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv883005	chr5:144945649-145107586	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv275206	chr5:145016621-145036932	Enhancers Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:145026800-145041000	Weak transcription	Ovary	ovary
2	chr5:145028400-145060400	Weak transcription	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links