Variant report
| Variant | rs9346470 |
|---|---|
| Chromosome Location | chr6:72136315-72136316 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000233237 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs12055679 | 0.86[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs12192535 | 0.95[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs12214632 | 0.95[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs1918478 | 0.89[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs6902769 | 0.93[EUR][1000 genomes] |
| rs6903167 | 0.85[CHD][hapmap] |
| rs7349905 | 0.81[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs763354 | 0.89[CEU][hapmap];0.82[CHB][hapmap];0.83[CHD][hapmap];0.86[GIH][hapmap];0.85[JPT][hapmap];0.87[TSI][hapmap];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs7740167 | 0.90[GIH][hapmap];0.83[MEX][hapmap];0.83[AMR][1000 genomes] |
| rs9283841 | 0.81[CHD][hapmap] |
| rs9342836 | 0.88[CEU][hapmap];0.82[CHB][hapmap];0.85[JPT][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs9346471 | 0.90[GIH][hapmap];0.83[MEX][hapmap];0.87[AMR][1000 genomes] |
| rs9351810 | 0.86[EUR][1000 genomes] |
| rs9351811 | 0.91[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs9355001 | 0.85[CHD][hapmap] |
| rs9364165 | 0.86[EUR][1000 genomes] |
| rs9364166 | 0.86[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs9364167 | 0.86[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs9364168 | 0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv830684 | chr6:72094842-72282684 | Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 488 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:72131200-72139400 | Weak transcription | H9 Derived Neuron Cultured Cells | ES cell derived |
