Variant report

Variant	rs9351810
Chromosome Location	chr6:72103444-72103445
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:72102188..72105063-chr6:72213344..72216016,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12192535	0.91[EUR][1000 genomes]
rs12214632	0.91[EUR][1000 genomes]
rs1405848	0.90[ASN][1000 genomes]
rs16880826	0.89[AMR][1000 genomes]
rs1852578	0.88[ASN][1000 genomes]
rs1918478	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2222722	0.88[ASN][1000 genomes]
rs4291065	0.91[ASN][1000 genomes]
rs6455418	0.84[ASN][1000 genomes]
rs6902769	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7349905	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs763354	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9283841	0.88[ASN][1000 genomes]
rs9342836	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9346470	0.86[EUR][1000 genomes]
rs9351809	0.89[AMR][1000 genomes]
rs9351811	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9364164	0.88[AMR][1000 genomes]
rs9364165	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9364166	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9364167	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9364168	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830684	chr6:72094842-72282684	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	488 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72084200-72106600	Weak transcription	Fetal Muscle Trunk	muscle
2	chr6:72085800-72105400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:72093400-72106400	Weak transcription	Spleen	Spleen
4	chr6:72094000-72105200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr6:72095000-72103600	Weak transcription	Stomach Mucosa	stomach
6	chr6:72095400-72103600	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr6:72096800-72106000	Enhancers	Adipose Nuclei	Adipose
8	chr6:72098200-72104800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr6:72098400-72105400	Weak transcription	Fetal Muscle Leg	muscle
10	chr6:72098400-72117200	Weak transcription	Pancreas	Pancrea
11	chr6:72098600-72103600	Weak transcription	Brain Hippocampus Middle	brain
12	chr6:72098800-72103800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr6:72099200-72106200	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr6:72099600-72114400	Weak transcription	Fetal Intestine Large	intestine
15	chr6:72099800-72104800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr6:72100200-72106400	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr6:72100200-72113200	Weak transcription	Fetal Intestine Small	intestine
18	chr6:72101000-72106400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr6:72101000-72113200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr6:72101400-72103600	Enhancers	NHLF	lung
21	chr6:72101400-72104800	Weak transcription	Brain Angular Gyrus	brain
22	chr6:72101400-72106400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr6:72101600-72104800	Genic enhancers	Hela-S3	cervix
24	chr6:72101600-72111400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr6:72101800-72103600	Weak transcription	Brain Anterior Caudate	brain
26	chr6:72101800-72104000	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr6:72101800-72105000	Enhancers	Placenta Amnion	Placenta Amnion
28	chr6:72101800-72105400	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr6:72101800-72105800	Weak transcription	Gastric	stomach
30	chr6:72101800-72105800	Weak transcription	Lung	lung
31	chr6:72101800-72106400	Enhancers	NHDF-Ad	bronchial
32	chr6:72101800-72106600	Enhancers	Osteobl	bone
33	chr6:72102000-72104000	Genic enhancers	HSMM	muscle
34	chr6:72102000-72104800	Weak transcription	Left Ventricle	heart
35	chr6:72102000-72105400	Enhancers	HMEC	breast
36	chr6:72102400-72104000	Transcr. at gene 5' and 3'	A549	lung
37	chr6:72102400-72104600	Enhancers	Liver	Liver
38	chr6:72102600-72103600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr6:72102600-72103600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr6:72102600-72104000	Enhancers	Placenta	Placenta
41	chr6:72102600-72104200	Enhancers	Fetal Heart	heart
42	chr6:72102600-72104800	Weak transcription	Right Ventricle	heart
43	chr6:72102600-72105000	Enhancers	Rectal Smooth Muscle	rectum
44	chr6:72102600-72106600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr6:72102600-72106600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr6:72102600-72106600	Enhancers	NH-A	brain
47	chr6:72102600-72106800	Enhancers	Colon Smooth Muscle	Colon
48	chr6:72102800-72104000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr6:72102800-72104000	Enhancers	Fetal Stomach	stomach
50	chr6:72103000-72104000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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