Variant report

Variant	rs9364166
Chromosome Location	chr6:72106622-72106623
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-B3GAT2-3	chr6:72106109-72106624	NONHSAT113497

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12192535	0.91[EUR][1000 genomes]
rs12214632	0.91[EUR][1000 genomes]
rs1405848	0.88[ASN][1000 genomes]
rs16880826	0.88[AMR][1000 genomes]
rs1852578	0.86[ASN][1000 genomes]
rs1918478	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2222722	0.87[CHB][hapmap];0.87[ASN][1000 genomes]
rs4291065	0.90[ASN][1000 genomes]
rs6455418	0.87[CHB][hapmap];0.83[ASN][1000 genomes]
rs6902769	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6903167	0.93[CHD][hapmap]
rs7349905	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs763354	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9283841	0.87[CHB][hapmap];0.98[CHD][hapmap];0.86[ASN][1000 genomes]
rs9342836	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9346470	0.89[CEU][hapmap];0.82[CHB][hapmap];0.83[CHD][hapmap];0.85[JPT][hapmap];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9351809	0.88[AMR][1000 genomes]
rs9351810	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9351811	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9355001	0.93[CHD][hapmap]
rs9364164	0.86[AMR][1000 genomes]
rs9364165	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9364167	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9364168	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830684	chr6:72094842-72282684	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	488 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72098400-72117200	Weak transcription	Pancreas	Pancrea
2	chr6:72099600-72114400	Weak transcription	Fetal Intestine Large	intestine
3	chr6:72100200-72113200	Weak transcription	Fetal Intestine Small	intestine
4	chr6:72101000-72113200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr6:72101600-72111400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr6:72102600-72106800	Enhancers	Colon Smooth Muscle	Colon
7	chr6:72103000-72107200	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr6:72103200-72106800	Enhancers	Duodenum Smooth Muscle	Duodenum
9	chr6:72103400-72114400	Weak transcription	Small Intestine	intestine
10	chr6:72104000-72122000	Weak transcription	Fetal Stomach	stomach
11	chr6:72104200-72107200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr6:72104200-72111800	Weak transcription	Fetal Heart	heart
13	chr6:72104800-72106800	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr6:72104800-72106800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
15	chr6:72104800-72107000	Genic enhancers	Psoas Muscle	Psoas
16	chr6:72105000-72110400	Weak transcription	Rectal Smooth Muscle	rectum
17	chr6:72105000-72113000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr6:72105200-72107200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr6:72105400-72106800	Enhancers	Brain Cingulate Gyrus	brain
20	chr6:72105400-72106800	Enhancers	Fetal Brain Female	brain
21	chr6:72105400-72107000	Enhancers	Brain Inferior Temporal Lobe	brain
22	chr6:72105400-72107200	Genic enhancers	HMEC	breast
23	chr6:72105400-72107600	Enhancers	Brain Angular Gyrus	brain
24	chr6:72105400-72107800	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr6:72105600-72106800	Enhancers	Right Ventricle	heart
26	chr6:72105600-72117200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr6:72105800-72107000	Genic enhancers	HSMM	muscle
28	chr6:72106000-72106800	Enhancers	Brain Germinal Matrix	brain
29	chr6:72106000-72107000	Genic enhancers	NHEK	skin
30	chr6:72106000-72107400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr6:72106000-72107800	Genic enhancers	A549	lung
32	chr6:72106000-72109200	Weak transcription	NHLF	lung
33	chr6:72106000-72119600	Weak transcription	Lung	lung
34	chr6:72106000-72124800	Weak transcription	Fetal Muscle Leg	muscle
35	chr6:72106200-72106800	Genic enhancers	Liver	Liver
36	chr6:72106200-72108000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr6:72106200-72109400	Genic enhancers	Fetal Kidney	kidney
38	chr6:72106200-72113800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr6:72106400-72106800	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr6:72106400-72106800	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr6:72106400-72106800	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr6:72106400-72106800	Enhancers	Aorta	Aorta
43	chr6:72106400-72106800	Genic enhancers	Brain Hippocampus Middle	brain
44	chr6:72106400-72106800	Genic enhancers	Left Ventricle	heart
45	chr6:72106400-72106800	Genic enhancers	Skeletal Muscle Female	skeletal muscle
46	chr6:72106400-72106800	Transcr. at gene 5' and 3'	Hela-S3	cervix
47	chr6:72106400-72106800	Genic enhancers	HSMMtube	muscle
48	chr6:72106400-72106800	Genic enhancers	HUVEC	blood vessel
49	chr6:72106400-72106800	Genic enhancers	NHDF-Ad	bronchial
50	chr6:72106400-72107600	Strong transcription	Adipose Nuclei	Adipose

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