Variant report

Variant	rs1405848
Chromosome Location	chr6:72109322-72109323
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12192535	0.89[ASN][1000 genomes]
rs12214632	0.89[ASN][1000 genomes]
rs1852578	0.94[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1918478	0.90[ASN][1000 genomes]
rs2222722	1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs34602770	0.85[ASN][1000 genomes]
rs4291065	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6455418	1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs6902769	0.99[ASN][1000 genomes]
rs6903167	0.91[CHB][hapmap];0.95[CHD][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs7349905	0.90[ASN][1000 genomes]
rs763354	0.87[CHB][hapmap];0.98[CHD][hapmap];0.86[MEX][hapmap];0.90[ASN][1000 genomes]
rs7740167	0.88[EUR][1000 genomes]
rs9283841	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.95[JPT][hapmap];0.98[LWK][hapmap];0.95[MEX][hapmap];0.99[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs9342836	0.87[CHB][hapmap];0.90[ASN][1000 genomes]
rs9346470	0.81[CHD][hapmap]
rs9346471	0.85[CEU][hapmap];0.81[TSI][hapmap];0.91[EUR][1000 genomes]
rs9351810	0.90[ASN][1000 genomes]
rs9351811	0.91[ASN][1000 genomes]
rs9355001	0.91[CHB][hapmap];0.95[CHD][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs9364165	0.89[ASN][1000 genomes]
rs9364166	0.88[ASN][1000 genomes]
rs9364167	0.88[ASN][1000 genomes]
rs9364168	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830684	chr6:72094842-72282684	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	488 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72098400-72117200	Weak transcription	Pancreas	Pancrea
2	chr6:72099600-72114400	Weak transcription	Fetal Intestine Large	intestine
3	chr6:72100200-72113200	Weak transcription	Fetal Intestine Small	intestine
4	chr6:72101000-72113200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr6:72101600-72111400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr6:72103400-72114400	Weak transcription	Small Intestine	intestine
7	chr6:72104000-72122000	Weak transcription	Fetal Stomach	stomach
8	chr6:72104200-72111800	Weak transcription	Fetal Heart	heart
9	chr6:72105000-72110400	Weak transcription	Rectal Smooth Muscle	rectum
10	chr6:72105000-72113000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr6:72105600-72117200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:72106000-72119600	Weak transcription	Lung	lung
13	chr6:72106000-72124800	Weak transcription	Fetal Muscle Leg	muscle
14	chr6:72106200-72109400	Genic enhancers	Fetal Kidney	kidney
15	chr6:72106200-72113800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:72106400-72126800	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr6:72106400-72128600	Weak transcription	Fetal Brain Male	brain
18	chr6:72106600-72110400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr6:72106600-72113200	Weak transcription	Brain Anterior Caudate	brain
20	chr6:72106600-72117200	Weak transcription	Gastric	stomach
21	chr6:72106600-72122000	Weak transcription	Brain Substantia Nigra	brain
22	chr6:72106800-72109600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr6:72106800-72110200	Weak transcription	Colon Smooth Muscle	Colon
24	chr6:72106800-72110200	Genic enhancers	Hela-S3	cervix
25	chr6:72106800-72110400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr6:72106800-72111200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr6:72106800-72113000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr6:72106800-72113000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr6:72106800-72113200	Weak transcription	Right Ventricle	heart
30	chr6:72106800-72113600	Weak transcription	Aorta	Aorta
31	chr6:72106800-72117000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr6:72106800-72119400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr6:72106800-72122000	Weak transcription	Brain Cingulate Gyrus	brain
34	chr6:72106800-72128600	Weak transcription	Fetal Brain Female	brain
35	chr6:72106800-72128800	Weak transcription	Brain Germinal Matrix	brain
36	chr6:72107000-72113200	Weak transcription	Psoas Muscle	Psoas
37	chr6:72107200-72109600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr6:72107200-72113800	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr6:72107600-72109600	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr6:72107600-72110400	Weak transcription	Adipose Nuclei	Adipose
41	chr6:72107600-72110400	Weak transcription	Brain Angular Gyrus	brain
42	chr6:72107600-72113200	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr6:72107800-72109600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr6:72107800-72109600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr6:72107800-72110400	Weak transcription	NH-A	brain
46	chr6:72107800-72110400	Weak transcription	NHEK	skin
47	chr6:72107800-72111400	Weak transcription	Left Ventricle	heart
48	chr6:72107800-72112000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr6:72107800-72112000	Weak transcription	HSMMtube	muscle
50	chr6:72107800-72113000	Weak transcription	Liver	Liver

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