Variant report

Variant	rs9347683
Chromosome Location	chr6:163149055-163149056
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 182 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:142)

rs_ID	r²[population]
rs10455913	0.82[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10806760	0.91[CHB][hapmap];0.86[CHD][hapmap];0.84[GIH][hapmap]
rs10806762	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10806763	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10945840	0.90[CHB][hapmap]
rs10945842	0.91[CHB][hapmap]
rs10945846	0.91[CHB][hapmap]
rs10945851	0.91[CHB][hapmap]
rs10945852	0.91[CHB][hapmap];1.00[YRI][hapmap]
rs10945854	0.82[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10945856	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10945859	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10945860	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11756579	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12190823	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12193969	0.81[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes]
rs12194834	0.86[CHB][hapmap]
rs12196897	0.86[CHB][hapmap]
rs12207841	0.82[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12215884	0.91[CHB][hapmap]
rs1893119	0.83[CHB][hapmap];0.82[CHD][hapmap];0.81[JPT][hapmap]
rs1893537	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1954804	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1954805	0.82[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1954908	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1954909	0.85[ASN][1000 genomes]
rs2023014	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2023016	0.91[CHB][hapmap];1.00[YRI][hapmap]
rs2023039	0.89[ASN][1000 genomes]
rs2105721	0.85[ASN][1000 genomes]
rs2156258	0.83[CHB][hapmap];0.89[CHD][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs2803045	0.86[CHB][hapmap];0.82[CHD][hapmap];0.81[JPT][hapmap]
rs2803046	0.86[CHB][hapmap];0.82[CHD][hapmap];0.81[JPT][hapmap]
rs2803047	0.86[CHB][hapmap];0.82[CHD][hapmap];0.81[JPT][hapmap]
rs2803087	0.82[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs2803092	0.86[ASN][1000 genomes]
rs2803097	0.83[CHB][hapmap];0.90[CHD][hapmap];0.81[JPT][hapmap]
rs2803103	0.83[CHB][hapmap];0.82[CHD][hapmap];0.81[JPT][hapmap]
rs2803108	0.83[CHB][hapmap];0.82[CHD][hapmap];0.81[JPT][hapmap]
rs2803115	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs2803118	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs2846515	0.83[CHB][hapmap];0.82[CHD][hapmap];0.81[JPT][hapmap]
rs2846517	0.86[CHB][hapmap]
rs2846528	0.86[CHB][hapmap];0.82[CHD][hapmap];0.81[JPT][hapmap]
rs2846529	0.86[CHB][hapmap];0.82[CHD][hapmap];0.81[JPT][hapmap]
rs2846533	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs2846556	0.91[CHB][hapmap]
rs2846562	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs2849530	0.87[ASN][1000 genomes]
rs2849536	0.83[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs2849537	0.87[ASN][1000 genomes]
rs2849538	0.85[ASN][1000 genomes]
rs2849539	0.84[ASN][1000 genomes]
rs2849541	0.85[ASN][1000 genomes]
rs2849543	0.82[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs2849555	0.83[CHB][hapmap];0.89[JPT][hapmap]
rs28868638	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4360108	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4425570	0.82[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs4554301	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4708970	0.95[CHB][hapmap]
rs4708971	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4708972	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4709635	0.90[CHB][hapmap]
rs4709640	0.91[CHB][hapmap]
rs4709641	0.91[CHB][hapmap];0.84[CHD][hapmap];0.84[GIH][hapmap];1.00[YRI][hapmap]
rs58292605	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6455843	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap]
rs6941209	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs719650	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs7349868	0.91[CHB][hapmap];0.82[CHD][hapmap];0.84[GIH][hapmap]
rs7451729	0.82[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7451965	0.95[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7454819	0.82[ASN][1000 genomes]
rs7746152	0.91[CHB][hapmap];0.84[CHD][hapmap]
rs7755248	0.90[CHB][hapmap]
rs7773363	0.84[CHB][hapmap]
rs9295192	0.91[CHB][hapmap];0.84[CHD][hapmap]
rs9295193	0.91[CHB][hapmap]
rs9295194	0.91[CHB][hapmap]
rs9346921	0.91[CHB][hapmap]
rs9346922	0.91[CHB][hapmap]
rs9346928	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9346929	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.80[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9346933	0.83[CHB][hapmap]
rs9347659	0.91[CHB][hapmap];0.84[CHD][hapmap];0.81[GIH][hapmap];0.80[MKK][hapmap];1.00[YRI][hapmap]
rs9347660	0.91[CHB][hapmap]
rs9347662	0.91[CHB][hapmap];1.00[YRI][hapmap]
rs9347666	0.89[CHB][hapmap]
rs9347667	0.85[CHB][hapmap]
rs9347680	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9347681	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9347684	0.93[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.95[TSI][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9347686	0.87[ASN][1000 genomes]
rs9355398	0.90[CHB][hapmap]
rs9355399	0.91[CHB][hapmap]
rs9356038	0.91[CHB][hapmap]
rs9356039	0.90[CHB][hapmap]
rs9356044	0.91[CHB][hapmap]
rs9356046	0.90[CHB][hapmap];1.00[YRI][hapmap]
rs9356047	0.95[CHB][hapmap]
rs9356049	0.91[CHB][hapmap]
rs9356052	0.91[CHB][hapmap];1.00[YRI][hapmap]
rs9356053	0.82[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9356054	0.82[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9356057	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9364662	0.91[CHB][hapmap];0.84[CHD][hapmap]
rs9364664	0.91[CHB][hapmap];0.80[CHD][hapmap];0.81[GIH][hapmap]
rs9364666	0.91[CHB][hapmap];1.00[YRI][hapmap]
rs9364667	0.91[CHB][hapmap];0.80[CHD][hapmap]
rs9365460	0.89[CHB][hapmap]
rs9365464	0.90[CHB][hapmap]
rs9365465	0.91[CHB][hapmap]
rs9365467	0.91[CHB][hapmap]
rs9365471	0.86[CHB][hapmap];1.00[YRI][hapmap]
rs9365472	0.90[CHB][hapmap]
rs9365473	0.91[CHB][hapmap];0.80[CHD][hapmap]
rs9365475	0.91[CHB][hapmap];1.00[YRI][hapmap]
rs9365483	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9365484	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9456795	0.89[CHB][hapmap]
rs9456797	0.82[CHB][hapmap]
rs9456802	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9456805	0.82[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs9456811	0.86[ASN][1000 genomes]
rs9458581	0.91[CHB][hapmap]
rs9458595	0.90[CHB][hapmap]
rs9458597	0.91[CHB][hapmap]
rs9458604	0.90[CHB][hapmap]
rs9458609	0.82[CHB][hapmap]
rs9458610	0.86[CHB][hapmap]
rs9458612	0.85[CHB][hapmap];1.00[YRI][hapmap]
rs9458616	0.89[CHB][hapmap]
rs9458619	1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.87[TSI][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9458629	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9458631	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9458637	0.81[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9458638	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9458639	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9458641	1.00[AFR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs956005	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs957906	0.91[CHB][hapmap];0.87[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:40 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv517562	chr6:162481460-163249645	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1018554	chr6:162482580-163161112	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv533215	chr6:162507055-163241611	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1028092	chr6:162519281-163194121	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv538506	chr6:162519281-163194121	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv533366	chr6:162584320-163241000	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv1025396	chr6:162590018-163183563	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv870232	chr6:162640581-163315481	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv1024378	chr6:162643449-163161112	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	nsv1021704	chr6:162643449-163235776	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
11	nsv538509	chr6:162643449-163235776	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
12	nsv917926	chr6:162646457-163609259	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
13	nsv533843	chr6:162654091-163241043	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
14	nsv1030546	chr6:162748287-163475085	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
15	nsv538518	chr6:162748287-163475085	Transcr. at gene 5' and 3' Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
16	nsv605159	chr6:162800156-163479507	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
17	nsv1022105	chr6:162817344-163320793	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
18	esv2757200	chr6:162840922-163233261	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
19	esv2759489	chr6:162840922-163233261	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
20	nsv1015507	chr6:162865145-163334779	Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
21	nsv886890	chr6:162871195-163248589	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
22	nsv886905	chr6:162928898-163284038	Enhancers Active TSS Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
23	nsv481693	chr6:162935354-163162438	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
24	nsv932127	chr6:163000261-163950870	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
25	nsv481960	chr6:163016189-163240987	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
26	nsv481959	chr6:163019491-163202495	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
27	nsv1018573	chr6:163025361-163172809	Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
28	nsv481962	chr6:163033886-163401583	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
29	nsv830857	chr6:163064811-163245813	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
30	nsv886912	chr6:163065019-163232332	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
31	nsv886913	chr6:163081812-163149497	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
32	nsv605180	chr6:163094923-163212299	Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
33	nsv1015155	chr6:163095774-163361624	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
34	nsv1032968	chr6:163095774-163391548	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
35	nsv529089	chr6:163129464-163516451	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
36	nsv1026490	chr6:163133433-163705708	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
37	nsv481692	chr6:163134854-163155124	Active TSS Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
38	nsv886914	chr6:163142272-163282067	Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
39	nsv869286	chr6:163146342-163697445	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
40	esv3357703	chr6:163147387-163149935	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9347683	PACRG	cis	parietal	SCAN

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:163146000-163149600	Enhancers	Stomach Mucosa	stomach
2	chr6:163147600-163149200	Active TSS	Right Atrium	heart
3	chr6:163147600-163149200	Active TSS	Stomach Smooth Muscle	stomach
4	chr6:163147600-163149400	Active TSS	Primary T killer naive cells fromperipheralblood	blood
5	chr6:163147600-163149400	Active TSS	A549	lung
6	chr6:163147800-163149200	Active TSS	ES-I3 Cell Line	embryonic stem cell
7	chr6:163147800-163149200	Active TSS	H1 Cell Line	embryonic stem cell
8	chr6:163147800-163149200	Active TSS	Primary hematopoietic stem cells short term culture	blood
9	chr6:163147800-163149200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
10	chr6:163147800-163149200	Active TSS	NH-A	brain
11	chr6:163147800-163149200	Active TSS	Osteobl	bone
12	chr6:163147800-163149400	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr6:163147800-163149400	Active TSS	Psoas Muscle	Psoas
14	chr6:163147800-163149400	Active TSS	Right Ventricle	heart
15	chr6:163147800-163149400	Active TSS	Thymus	Thymus
16	chr6:163147800-163149600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr6:163147800-163149600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr6:163147800-163149600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr6:163147800-163149600	Active TSS	Duodenum Smooth Muscle	Duodenum
20	chr6:163147800-163149600	Active TSS	Pancreatic Islets	Pancreatic Islet
21	chr6:163147800-163149600	Active TSS	NHDF-Ad	bronchial
22	chr6:163148000-163149200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr6:163148000-163149200	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
24	chr6:163148000-163149200	Active TSS	Primary T helper naive cells from peripheral blood	blood
25	chr6:163148000-163149200	Active TSS	Muscle Satellite Cultured Cells	--
26	chr6:163148000-163149200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr6:163148000-163149200	Active TSS	Brain Anterior Caudate	brain
28	chr6:163148000-163149200	Active TSS	Brain Hippocampus Middle	brain
29	chr6:163148000-163149200	Active TSS	Brain Inferior Temporal Lobe	brain
30	chr6:163148000-163149200	Active TSS	Brain Substantia Nigra	brain
31	chr6:163148000-163149200	Active TSS	Duodenum Mucosa	Duodenum
32	chr6:163148000-163149200	Active TSS	Fetal Intestine Large	intestine
33	chr6:163148000-163149200	Active TSS	Fetal Intestine Small	intestine
34	chr6:163148000-163149200	Active TSS	Fetal Lung	lung
35	chr6:163148000-163149200	Active TSS	Fetal Muscle Trunk	muscle
36	chr6:163148000-163149200	Active TSS	Rectal Mucosa Donor 29	rectum
37	chr6:163148000-163149200	Active TSS	Skeletal Muscle Female	skeletal muscle
38	chr6:163148000-163149200	Active TSS	GM12878-XiMat	blood
39	chr6:163148000-163149400	Active TSS	H9 Cell Line	embryonic stem cell
40	chr6:163148000-163149400	Active TSS	Breast Myoepithelial Primary Cells	Breast
41	chr6:163148000-163149400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr6:163148000-163149400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr6:163148000-163149400	Active TSS	Esophagus	oesophagus
44	chr6:163148000-163149400	Active TSS	Fetal Stomach	stomach
45	chr6:163148000-163149400	Active TSS	Left Ventricle	heart
46	chr6:163148000-163149400	Active TSS	Ovary	ovary
47	chr6:163148000-163149400	Active TSS	Pancreas	Pancrea
48	chr6:163148000-163149600	Active TSS	iPS-15b Cell Line	embryonic stem cell
49	chr6:163148000-163149600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr6:163148000-163149600	Active TSS	Aorta	Aorta

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