Variant report

Variant	rs9349068
Chromosome Location	chr6:12048127-12048128
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:12042974..12045827-chr6:12047311..12049973,3	K562	blood:
2	chr6:12010545..12015080-chr6:12042990..12048217,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000095951	Chromatin interaction

rs_ID	r²[population]
rs10498679	0.82[JPT][hapmap]
rs12176308	0.82[JPT][hapmap]
rs12234132	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs16872277	0.82[JPT][hapmap]
rs66727286	0.82[AFR][1000 genomes]
rs6910959	0.82[JPT][hapmap]
rs6916070	1.00[YRI][hapmap]
rs6940075	0.82[JPT][hapmap]
rs9349095	0.82[JPT][hapmap]
rs9366954	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9366970	0.82[JPT][hapmap]
rs9366972	0.82[JPT][hapmap]
rs9369070	0.82[JPT][hapmap]
rs9369072	0.82[JPT][hapmap]
rs9380764	0.82[JPT][hapmap]
rs9394517	0.82[JPT][hapmap]

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12018600-12049400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr6:12018600-12052000	Weak transcription	Thymus	Thymus
3	chr6:12034800-12061000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:12035000-12049800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr6:12035200-12052200	Weak transcription	Stomach Mucosa	stomach
6	chr6:12040200-12048600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:12040200-12060800	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr6:12040400-12049400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr6:12040400-12050200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr6:12040400-12058800	Weak transcription	Fetal Muscle Leg	muscle
11	chr6:12040400-12059600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr6:12041000-12060800	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr6:12041400-12048200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr6:12041400-12052200	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr6:12042200-12050000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr6:12045200-12049200	Weak transcription	Fetal Brain Female	brain
17	chr6:12045200-12049400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr6:12045200-12052000	Weak transcription	Primary hematopoietic stem cells	blood
19	chr6:12045400-12049400	Weak transcription	HepG2	liver
20	chr6:12045400-12050000	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr6:12045400-12051400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr6:12045400-12052600	Weak transcription	Duodenum Mucosa	Duodenum
23	chr6:12045600-12049000	Weak transcription	NH-A	brain
24	chr6:12045600-12049200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr6:12045600-12049400	Weak transcription	Ovary	ovary
26	chr6:12045600-12049600	Weak transcription	Adipose Nuclei	Adipose
27	chr6:12045600-12050800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr6:12045600-12051400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr6:12045600-12051400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr6:12045600-12056000	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr6:12045600-12058200	Weak transcription	Small Intestine	intestine
32	chr6:12045600-12058600	Weak transcription	A549	lung
33	chr6:12045600-12058800	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr6:12045600-12059800	Weak transcription	Left Ventricle	heart
35	chr6:12045600-12059800	Weak transcription	Psoas Muscle	Psoas
36	chr6:12045600-12061000	Weak transcription	Fetal Thymus	thymus
37	chr6:12045600-12061000	Weak transcription	Pancreas	Pancrea
38	chr6:12045600-12061200	Weak transcription	Gastric	stomach
39	chr6:12045600-12065800	Weak transcription	Aorta	Aorta
40	chr6:12045600-12066200	Weak transcription	HSMM	muscle
41	chr6:12045600-12066400	Weak transcription	Hela-S3	cervix
42	chr6:12045800-12048800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr6:12045800-12049000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr6:12045800-12049200	Weak transcription	HMEC	breast
45	chr6:12045800-12049400	Weak transcription	Primary T cells fromperipheralblood	blood
46	chr6:12045800-12049600	Weak transcription	Right Atrium	heart
47	chr6:12045800-12051000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
48	chr6:12045800-12051200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr6:12045800-12052200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
50	chr6:12045800-12052400	Weak transcription	Stomach Smooth Muscle	stomach

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