Variant report

Variant	rs9350342
Chromosome Location	chr6:21274160-21274161
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10946445	0.92[ASN][1000 genomes]
rs12055791	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12664396	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2021817	0.86[ASN][1000 genomes]
rs72838096	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9348463	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9348464	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9358403	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9368291	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9368292	0.91[ASN][1000 genomes]
rs9466017	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830600	chr6:21133128-21312355	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:21271000-21277800	Weak transcription	Right Atrium	heart
2	chr6:21271400-21275000	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr6:21271600-21275200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr6:21271800-21276600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr6:21273600-21274200	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
6	chr6:21273800-21277600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr6:21273800-21277600	Weak transcription	Brain Hippocampus Middle	brain
8	chr6:21274000-21274600	Enhancers	Fetal Brain Male	brain
9	chr6:21274000-21278600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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