Variant report

Variant	rs9368292
Chromosome Location	chr6:21279204-21279205
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10946445	0.96[ASN][1000 genomes]
rs12055791	0.98[ASN][1000 genomes]
rs2021817	0.94[ASN][1000 genomes]
rs807836	0.91[CHB][hapmap];0.80[GIH][hapmap]
rs807837	0.91[CHB][hapmap];0.80[GIH][hapmap]
rs9348463	0.88[ASN][1000 genomes]
rs9348464	0.99[ASN][1000 genomes]
rs9350342	0.91[ASN][1000 genomes]
rs9358403	0.85[ASN][1000 genomes]
rs9368291	0.94[ASN][1000 genomes]
rs9466017	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830600	chr6:21133128-21312355	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
2	esv3380404	chr6:21276673-21279771	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9368292	CAP2	cis	cerebellum	SCAN
rs9368292	GMNN	cis	cerebellum	SCAN

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:21274400-21279600	Weak transcription	Aorta	Aorta
2	chr6:21275600-21280000	Enhancers	Fetal Intestine Small	intestine
3	chr6:21277400-21279600	Enhancers	Fetal Heart	heart
4	chr6:21277800-21279400	Enhancers	Fetal Brain Female	brain
5	chr6:21278200-21281200	Weak transcription	Placenta	Placenta
6	chr6:21278400-21279400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:21278400-21281800	Weak transcription	Right Atrium	heart
8	chr6:21278600-21279400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr6:21278800-21281800	Weak transcription	Hela-S3	cervix
10	chr6:21279000-21279400	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr6:21279000-21281600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr6:21279000-21281800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr6:21279200-21279400	Enhancers	H9 Cell Line	embryonic stem cell
14	chr6:21279200-21284400	Weak transcription	Fetal Brain Male	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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