Variant report

Variant	rs9358403
Chromosome Location	chr6:21266137-21266138
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10946445	0.85[ASN][1000 genomes]
rs12055791	0.85[ASN][1000 genomes]
rs12664396	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2021817	0.85[ASN][1000 genomes]
rs72838096	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9348463	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9348464	0.85[ASN][1000 genomes]
rs9350342	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9358402	0.81[ASN][1000 genomes]
rs9368291	0.83[ASN][1000 genomes]
rs9368292	0.85[ASN][1000 genomes]
rs9466017	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830600	chr6:21133128-21312355	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:21263600-21266600	Enhancers	HMEC	breast
2	chr6:21263800-21266600	Enhancers	NHEK	skin
3	chr6:21263800-21266800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr6:21263800-21273600	Weak transcription	Aorta	Aorta
5	chr6:21264000-21266400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:21264000-21266800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:21264400-21271000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr6:21264400-21271800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr6:21264400-21272000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr6:21264600-21266200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr6:21265200-21266400	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr6:21265400-21266400	Enhancers	Muscle Satellite Cultured Cells	--
13	chr6:21265600-21266400	Enhancers	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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