Variant report

Variant	rs9357922
Chromosome Location	chr6:56394173-56394174
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:56386188..56388419-chr6:56391719..56395434,3	MCF-7	breast:
2	chr6:56379723..56396922-chr6:56400495..56411638,31	K562	blood:
3	chr6:56393226..56394746-chr6:56401973..56403869,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151914	Chromatin interaction

Extended variants
information (count: 102 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:97)

rs_ID	r²[population]
rs11753813	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs11756977	0.85[CEU][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11758339	0.87[CHB][hapmap];0.93[JPT][hapmap]
rs11759493	0.90[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11961668	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12174955	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs12527139	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13194746	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13204556	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13219448	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1359068	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1359070	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1535610	0.82[ASN][1000 genomes]
rs1535612	0.87[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs16887974	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2064591	0.83[EUR][1000 genomes]
rs2273973	0.87[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2273974	0.86[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2397226	0.87[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34954984	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35671304	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35926142	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4130060	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4143827	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4143828	0.90[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4236139	0.82[JPT][hapmap];0.82[EUR][1000 genomes]
rs4236140	0.90[CEU][hapmap];0.82[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4236141	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4236142	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4236143	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4236144	0.90[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4236145	0.90[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.80[YRI][hapmap];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4283892	0.90[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4329120	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4331988	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4346846	0.82[JPT][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4454141	0.82[JPT][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4466244	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4472350	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4473850	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4499917	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4544910	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs45486696	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4712132	0.90[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.80[YRI][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4712133	0.85[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4715625	0.86[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4715626	0.82[JPT][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4715627	0.82[JPT][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4715628	0.82[JPT][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4715629	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4715630	0.90[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4715631	0.85[CEU][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6459161	0.80[JPT][hapmap]
rs6459163	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6906792	0.82[JPT][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6907917	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6913572	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6914184	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6919608	0.81[CEU][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6922770	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6927258	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs6939305	1.00[CEU][hapmap];0.82[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs721475	0.83[ASN][1000 genomes]
rs72877350	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7741295	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7743011	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7746753	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7755361	0.82[CEU][hapmap];0.82[JPT][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7755573	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7758054	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7759875	0.80[CEU][hapmap];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7760640	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7760695	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7761281	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7762629	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9296848	0.90[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9296849	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9296850	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9349823	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs9349825	0.80[ASN][1000 genomes]
rs9349826	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9349828	0.86[JPT][hapmap]
rs9357921	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9370533	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs9370534	0.87[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs9370535	0.86[CEU][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9382635	0.82[ASN][1000 genomes]
rs9396213	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs9396214	0.85[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9396215	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9396218	0.82[ASN][1000 genomes]
rs9396220	0.86[CEU][hapmap];0.82[EUR][1000 genomes]
rs9464389	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9475709	0.84[ASN][1000 genomes]
rs9475713	0.82[JPT][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9475714	0.82[JPT][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9475716	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491933	chr6:56177722-57171010	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv830666	chr6:56243743-56419599	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv885912	chr6:56327849-56458836	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1016868	chr6:56376165-56417631	Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
5	nsv934026	chr6:56382056-57184218	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56341800-56407400	Weak transcription	Spleen	Spleen
2	chr6:56362800-56400200	Weak transcription	Colonic Mucosa	Colon
3	chr6:56363000-56402200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:56374400-56396800	Weak transcription	Fetal Brain Female	brain
5	chr6:56374600-56395200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr6:56374600-56399600	Weak transcription	Fetal Thymus	thymus
7	chr6:56376400-56407200	Weak transcription	Gastric	stomach
8	chr6:56377200-56404200	Weak transcription	K562	blood
9	chr6:56380600-56401200	Weak transcription	Psoas Muscle	Psoas
10	chr6:56383200-56396400	Weak transcription	Brain Germinal Matrix	brain
11	chr6:56383200-56402400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:56384400-56402200	Weak transcription	Small Intestine	intestine
13	chr6:56387200-56396800	Weak transcription	Hela-S3	cervix
14	chr6:56388000-56402200	Strong transcription	Fetal Intestine Large	intestine
15	chr6:56388200-56396400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr6:56388200-56401800	Strong transcription	Liver	Liver
17	chr6:56388800-56399600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr6:56390200-56397800	Strong transcription	Rectal Mucosa Donor 31	rectum
19	chr6:56390200-56401400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr6:56390200-56401600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr6:56390400-56398000	Strong transcription	Duodenum Mucosa	Duodenum
22	chr6:56390400-56400000	Strong transcription	Monocytes-CD14+_RO01746	blood
23	chr6:56390600-56394800	Genic enhancers	Colon Smooth Muscle	Colon
24	chr6:56390600-56395400	Strong transcription	HepG2	liver
25	chr6:56390600-56396400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr6:56390600-56403800	Weak transcription	Thymus	Thymus
27	chr6:56390800-56395400	Strong transcription	Placenta	Placenta
28	chr6:56390800-56395800	Genic enhancers	Osteobl	bone
29	chr6:56390800-56398400	Strong transcription	Fetal Muscle Trunk	muscle
30	chr6:56390800-56402400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr6:56390800-56403000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr6:56391000-56394200	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr6:56391000-56394400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
34	chr6:56391000-56395400	Genic enhancers	Muscle Satellite Cultured Cells	--
35	chr6:56391000-56397800	Weak transcription	Stomach Mucosa	stomach
36	chr6:56391000-56398000	Strong transcription	Skeletal Muscle Male	skeletal muscle
37	chr6:56391000-56398800	Strong transcription	Primary monocytes fromperipheralblood	blood
38	chr6:56391200-56394600	Genic enhancers	Rectal Smooth Muscle	rectum
39	chr6:56391200-56398600	Strong transcription	Rectal Mucosa Donor 29	rectum
40	chr6:56391400-56394200	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr6:56391400-56394200	Weak transcription	Pancreas	Pancrea
42	chr6:56391400-56394800	Strong transcription	HSMMtube	muscle
43	chr6:56391400-56395000	Strong transcription	HUES6 Cell Line	embryonic stem cell
44	chr6:56391400-56395200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
45	chr6:56391400-56396400	Weak transcription	Brain Angular Gyrus	brain
46	chr6:56391400-56396400	Weak transcription	A549	lung
47	chr6:56391400-56396600	Weak transcription	Aorta	Aorta
48	chr6:56391400-56396600	Weak transcription	Brain Hippocampus Middle	brain
49	chr6:56391400-56397800	Weak transcription	Pancreatic Islets	Pancreatic Islet
50	chr6:56391400-56398400	Strong transcription	HUES64 Cell Line	embryonic stem cell

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