Variant report

Variant	rs9370534
Chromosome Location	chr6:56337549-56337550
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:56336959..56338872-chr6:56404795..56407459,2	K562	blood:
2	chr6:56335330..56337721-chr6:56339949..56341801,2	K562	blood:

Variant related genes	Relation type
ENSG00000151914	Chromatin interaction

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs11753813	0.93[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11758339	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11759493	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11961668	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12174955	1.00[CEU][hapmap];0.94[CHB][hapmap];0.88[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12527139	0.81[ASN][1000 genomes]
rs13204556	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1359068	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1359070	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1535610	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1535612	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1570492	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2273972	0.86[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2273973	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2273974	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2397226	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2894837	0.88[CHB][hapmap];0.82[ASN][1000 genomes]
rs34954984	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35671304	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35926142	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3927453	0.86[ASN][1000 genomes]
rs4130060	0.91[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs4143828	0.91[CEU][hapmap];0.87[CHB][hapmap];0.93[JPT][hapmap]
rs4236139	0.82[JPT][hapmap]
rs4236140	0.90[CEU][hapmap];0.82[JPT][hapmap]
rs4236141	0.86[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs4236144	0.91[CEU][hapmap];0.87[CHB][hapmap];0.93[JPT][hapmap]
rs4236145	0.90[CEU][hapmap];0.87[CHB][hapmap];0.93[JPT][hapmap]
rs4283892	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4331988	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4346846	0.82[JPT][hapmap]
rs4454141	0.82[JPT][hapmap]
rs4499917	0.90[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs4544910	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs45486696	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4712132	0.90[CEU][hapmap];0.87[CHB][hapmap];0.93[JPT][hapmap]
rs4712133	0.87[CHB][hapmap];0.93[JPT][hapmap]
rs4715625	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4715626	0.82[JPT][hapmap]
rs4715627	0.82[JPT][hapmap]
rs4715628	0.82[JPT][hapmap]
rs4715630	0.90[CEU][hapmap];0.87[CHB][hapmap];0.93[JPT][hapmap]
rs59101638	0.90[ASN][1000 genomes]
rs6459161	0.86[CEU][hapmap];0.87[CHB][hapmap];0.80[JPT][hapmap];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6459163	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs656550	0.82[CEU][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs656988	0.81[CEU][hapmap];0.88[CHB][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6906792	0.82[JPT][hapmap]
rs6907917	0.81[ASN][1000 genomes]
rs6911502	0.81[CEU][hapmap];0.82[CHB][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6913572	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6914325	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6927258	0.95[CEU][hapmap];0.94[CHB][hapmap];0.87[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6928601	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6939305	0.82[JPT][hapmap]
rs721475	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs72877350	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7741295	0.90[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7746753	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7755220	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7755361	0.82[CEU][hapmap];0.82[JPT][hapmap]
rs7758054	0.81[ASN][1000 genomes]
rs7759875	0.84[CEU][hapmap]
rs7760640	0.82[CEU][hapmap]
rs7761281	0.87[CHB][hapmap];0.93[JPT][hapmap]
rs7762629	0.81[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs9296848	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9296850	0.95[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs9349822	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9349823	1.00[CEU][hapmap];0.93[CHB][hapmap];0.87[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9349824	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9349825	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9349828	0.86[JPT][hapmap]
rs9357921	0.87[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs9357922	0.87[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs9370531	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9370533	0.85[CEU][hapmap];0.94[CHB][hapmap];0.87[JPT][hapmap]
rs9370535	0.91[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9382631	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9382635	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9396211	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9396213	0.82[CEU][hapmap];0.94[CHB][hapmap];0.87[JPT][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9396214	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9396215	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9396218	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9464389	0.85[ASN][1000 genomes]
rs9475709	0.97[ASN][1000 genomes]
rs9475713	0.82[JPT][hapmap]
rs9475714	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491933	chr6:56177722-57171010	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv830666	chr6:56243743-56419599	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv885912	chr6:56327849-56458836	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56308800-56373800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:56315000-56347200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr6:56315000-56349800	Strong transcription	HSMM	muscle
4	chr6:56315600-56371000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr6:56316800-56337600	Weak transcription	Hela-S3	cervix
6	chr6:56317200-56342800	Strong transcription	Muscle Satellite Cultured Cells	--
7	chr6:56318000-56340600	Strong transcription	Fetal Intestine Large	intestine
8	chr6:56319000-56348200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:56319200-56340400	Strong transcription	NH-A	brain
10	chr6:56319200-56348400	Strong transcription	NHDF-Ad	bronchial
11	chr6:56319400-56343600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr6:56319400-56344200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:56320000-56338800	Strong transcription	Liver	Liver
14	chr6:56321000-56343400	Strong transcription	Duodenum Smooth Muscle	Duodenum
15	chr6:56321200-56343800	Strong transcription	HUES64 Cell Line	embryonic stem cell
16	chr6:56322200-56339000	Strong transcription	Skeletal Muscle Female	skeletal muscle
17	chr6:56322200-56349200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr6:56322400-56344200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
19	chr6:56322600-56348200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr6:56324800-56340400	Weak transcription	Spleen	Spleen
21	chr6:56325000-56340000	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr6:56325000-56346600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr6:56327200-56338800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr6:56327200-56351400	Weak transcription	Fetal Thymus	thymus
25	chr6:56327600-56340600	Weak transcription	Stomach Mucosa	stomach
26	chr6:56328600-56340600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr6:56328600-56362000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr6:56329200-56373800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr6:56329400-56340600	Weak transcription	Colonic Mucosa	Colon
30	chr6:56330000-56351400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr6:56330000-56372400	Weak transcription	Lung	lung
32	chr6:56330200-56347200	Weak transcription	Small Intestine	intestine
33	chr6:56330200-56357400	Weak transcription	Esophagus	oesophagus
34	chr6:56330400-56340600	Weak transcription	Fetal Stomach	stomach
35	chr6:56331200-56340400	Weak transcription	Fetal Intestine Small	intestine
36	chr6:56332200-56339800	Weak transcription	Pancreatic Islets	Pancreatic Islet
37	chr6:56332800-56342400	Strong transcription	HSMMtube	muscle
38	chr6:56332800-56346000	Strong transcription	Adipose Nuclei	Adipose
39	chr6:56332800-56349200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr6:56333000-56338400	Strong transcription	Fetal Kidney	kidney
41	chr6:56333000-56339000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr6:56333000-56344400	Strong transcription	GM12878-XiMat	blood
43	chr6:56333000-56350000	Strong transcription	HMEC	breast
44	chr6:56333200-56338800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr6:56333200-56338800	Strong transcription	Colon Smooth Muscle	Colon
46	chr6:56333200-56338800	Strong transcription	Left Ventricle	heart
47	chr6:56333200-56338800	Strong transcription	Sigmoid Colon	Sigmoid Colon
48	chr6:56333200-56339000	Strong transcription	HepG2	liver
49	chr6:56333200-56339400	Strong transcription	H1 Cell Line	embryonic stem cell
50	chr6:56333200-56340800	Strong transcription	Fetal Lung	lung

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