Variant report

Variant	rs9370533
Chromosome Location	chr6:56332962-56332963
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs11753813	0.95[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap]
rs11756977	0.84[CEU][hapmap]
rs11758339	0.85[CEU][hapmap];0.94[CHB][hapmap];0.81[JPT][hapmap]
rs11759493	0.90[CEU][hapmap];0.94[CHB][hapmap];0.87[JPT][hapmap]
rs12174955	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1535612	0.95[CEU][hapmap];0.94[CHB][hapmap];0.87[JPT][hapmap]
rs2273972	0.83[JPT][hapmap]
rs2273973	0.95[CEU][hapmap];0.94[CHB][hapmap];0.87[JPT][hapmap]
rs2273974	0.90[CEU][hapmap];0.94[CHB][hapmap];0.87[JPT][hapmap]
rs2397226	0.94[CHB][hapmap];0.87[JPT][hapmap]
rs2894837	0.94[CHB][hapmap]
rs4130060	0.86[CEU][hapmap];0.81[CHB][hapmap];0.87[JPT][hapmap]
rs4143828	0.86[CEU][hapmap];0.87[CHB][hapmap];0.81[JPT][hapmap]
rs4236139	0.95[CEU][hapmap]
rs4236140	0.90[CEU][hapmap]
rs4236141	0.95[CEU][hapmap];0.81[CHB][hapmap];0.87[JPT][hapmap]
rs4236144	0.90[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap]
rs4236145	0.90[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap]
rs4283892	0.90[CEU][hapmap];0.93[CHB][hapmap];0.87[JPT][hapmap]
rs4346846	0.90[CEU][hapmap]
rs4454141	0.95[CEU][hapmap]
rs4499917	0.90[CEU][hapmap];0.81[CHB][hapmap];0.87[JPT][hapmap]
rs4712132	0.90[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap]
rs4712133	0.84[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap]
rs4715625	0.90[CEU][hapmap];0.94[CHB][hapmap];0.87[JPT][hapmap]
rs4715626	0.95[CEU][hapmap]
rs4715627	0.95[CEU][hapmap]
rs4715628	0.90[CEU][hapmap]
rs4715629	0.95[CEU][hapmap]
rs4715630	0.90[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap]
rs4715631	0.84[CEU][hapmap]
rs6459161	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.90[YRI][hapmap]
rs656550	0.85[CHB][hapmap]
rs656988	0.88[CHB][hapmap]
rs6904202	0.95[CEU][hapmap];0.82[JPT][hapmap]
rs6906792	0.90[CEU][hapmap]
rs6911502	0.88[CHB][hapmap]
rs6922770	0.90[CEU][hapmap]
rs6927258	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap]
rs7741295	0.90[CEU][hapmap];0.81[CHB][hapmap];0.87[JPT][hapmap]
rs7755361	0.90[CEU][hapmap]
rs7759875	0.95[CEU][hapmap]
rs7760640	0.90[CEU][hapmap]
rs7761281	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs7762629	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs9296848	0.90[CEU][hapmap];0.94[CHB][hapmap];0.87[JPT][hapmap]
rs9296850	0.86[CEU][hapmap];0.81[CHB][hapmap];0.87[JPT][hapmap]
rs9349823	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap]
rs9357921	0.90[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap]
rs9357922	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs9370534	0.85[CEU][hapmap];0.94[CHB][hapmap];0.87[JPT][hapmap]
rs9370535	0.90[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap]
rs9396213	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs9396214	0.84[CEU][hapmap];0.94[CHB][hapmap];0.87[JPT][hapmap]
rs9396220	0.81[CEU][hapmap]
rs9475713	0.95[CEU][hapmap]
rs9475714	0.95[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491933	chr6:56177722-57171010	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv830666	chr6:56243743-56419599	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv885912	chr6:56327849-56458836	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56308800-56373800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:56315000-56347200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr6:56315000-56349800	Strong transcription	HSMM	muscle
4	chr6:56315600-56371000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr6:56316800-56337600	Weak transcription	Hela-S3	cervix
6	chr6:56317200-56342800	Strong transcription	Muscle Satellite Cultured Cells	--
7	chr6:56318000-56340600	Strong transcription	Fetal Intestine Large	intestine
8	chr6:56319000-56348200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:56319200-56340400	Strong transcription	NH-A	brain
10	chr6:56319200-56348400	Strong transcription	NHDF-Ad	bronchial
11	chr6:56319400-56343600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr6:56319400-56344200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:56320000-56338800	Strong transcription	Liver	Liver
14	chr6:56321000-56343400	Strong transcription	Duodenum Smooth Muscle	Duodenum
15	chr6:56321200-56343800	Strong transcription	HUES64 Cell Line	embryonic stem cell
16	chr6:56322200-56339000	Strong transcription	Skeletal Muscle Female	skeletal muscle
17	chr6:56322200-56349200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr6:56322400-56344200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
19	chr6:56322600-56348200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr6:56324000-56333600	Weak transcription	Psoas Muscle	Psoas
21	chr6:56324800-56336800	Weak transcription	Gastric	stomach
22	chr6:56324800-56340400	Weak transcription	Spleen	Spleen
23	chr6:56325000-56340000	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr6:56325000-56346600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr6:56325200-56333400	Weak transcription	Fetal Heart	heart
26	chr6:56325200-56336200	Weak transcription	Fetal Brain Female	brain
27	chr6:56326800-56336800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr6:56327200-56338800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr6:56327200-56351400	Weak transcription	Fetal Thymus	thymus
30	chr6:56327600-56340600	Weak transcription	Stomach Mucosa	stomach
31	chr6:56328400-56333200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr6:56328600-56336800	Weak transcription	Aorta	Aorta
33	chr6:56328600-56340600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr6:56328600-56362000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr6:56329000-56333800	Weak transcription	Placenta	Placenta
36	chr6:56329200-56334800	Weak transcription	Primary hematopoietic stem cells	blood
37	chr6:56329200-56373800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr6:56329400-56340600	Weak transcription	Colonic Mucosa	Colon
39	chr6:56329600-56336800	Weak transcription	Fetal Brain Male	brain
40	chr6:56329800-56333400	Weak transcription	Placenta Amnion	Placenta Amnion
41	chr6:56329800-56336400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr6:56330000-56334600	Weak transcription	Brain Germinal Matrix	brain
43	chr6:56330000-56336800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr6:56330000-56351400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
45	chr6:56330000-56372400	Weak transcription	Lung	lung
46	chr6:56330200-56333000	Weak transcription	Monocytes-CD14+_RO01746	blood
47	chr6:56330200-56333200	Weak transcription	HUVEC	blood vessel
48	chr6:56330200-56335600	Weak transcription	NHEK	skin
49	chr6:56330200-56336800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr6:56330200-56336800	Weak transcription	Right Ventricle	heart

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