Variant report

Variant	rs9370531
Chromosome Location	chr6:56324179-56324180
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs11751569	0.82[YRI][hapmap]
rs11753813	0.93[CHB][hapmap];0.93[JPT][hapmap];0.92[ASN][1000 genomes]
rs11757910	0.80[YRI][hapmap]
rs11757941	0.82[YRI][hapmap]
rs11758339	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11759493	0.90[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11961668	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12174955	1.00[CEU][hapmap];0.94[CHB][hapmap];0.81[JPT][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13204556	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13218268	0.82[YRI][hapmap]
rs1359068	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1359070	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1535610	0.95[ASN][1000 genomes]
rs1535612	1.00[CHB][hapmap];0.93[JPT][hapmap];0.93[ASN][1000 genomes]
rs1570492	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2273972	0.86[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2273973	1.00[CHB][hapmap];0.93[JPT][hapmap];0.92[ASN][1000 genomes]
rs2273974	0.91[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2294697	0.82[YRI][hapmap]
rs2397221	0.82[YRI][hapmap]
rs2397226	1.00[CHB][hapmap];0.93[JPT][hapmap];0.92[YRI][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2894837	0.88[CHB][hapmap]
rs34954984	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35671304	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35926142	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3927453	0.86[ASN][1000 genomes]
rs4130060	0.86[CEU][hapmap];0.87[CHB][hapmap];0.93[JPT][hapmap];0.92[YRI][hapmap];0.81[ASN][1000 genomes]
rs4143828	0.86[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap]
rs4236140	0.90[CEU][hapmap]
rs4236141	0.86[CHB][hapmap];0.93[JPT][hapmap]
rs4236144	0.86[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap]
rs4236145	0.90[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap]
rs4283892	0.90[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4331988	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4499917	0.90[CEU][hapmap];0.87[CHB][hapmap];0.93[JPT][hapmap]
rs4544910	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs45486696	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4712132	0.90[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap]
rs4712133	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs4715625	0.91[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4715630	0.90[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap]
rs59101638	0.90[ASN][1000 genomes]
rs594435	0.84[JPT][hapmap];0.80[ASN][1000 genomes]
rs595238	0.91[YRI][hapmap]
rs606894	0.80[ASN][1000 genomes]
rs607271	0.80[ASN][1000 genomes]
rs636389	0.91[YRI][hapmap]
rs6459161	0.86[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6459163	0.93[AFR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs656550	0.82[CEU][hapmap];0.81[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs656988	0.82[CEU][hapmap];0.88[CHB][hapmap];0.81[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6911502	0.81[CEU][hapmap];0.82[CHB][hapmap];0.81[JPT][hapmap];0.91[YRI][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6913572	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6914325	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6927258	0.95[CEU][hapmap];0.94[CHB][hapmap];0.81[JPT][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6928601	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs721475	0.92[ASN][1000 genomes]
rs72877350	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7741295	0.90[CEU][hapmap];0.87[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap]
rs7746753	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7755220	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7761281	0.80[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap]
rs7762629	0.87[CHB][hapmap];0.93[JPT][hapmap];0.82[YRI][hapmap]
rs7775847	0.82[YRI][hapmap]
rs9296848	0.90[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9296850	0.90[CEU][hapmap];0.87[CHB][hapmap];0.93[JPT][hapmap]
rs9349822	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9349823	1.00[CEU][hapmap];0.93[CHB][hapmap];0.81[JPT][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9349824	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9349825	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9357921	0.87[CHB][hapmap];0.93[JPT][hapmap]
rs9357922	0.87[CHB][hapmap];0.93[JPT][hapmap]
rs9370533	0.86[CEU][hapmap];0.94[CHB][hapmap];0.81[JPT][hapmap]
rs9370534	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9370535	0.91[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap];0.91[YRI][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9382631	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9382635	0.95[ASN][1000 genomes]
rs9396211	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9396213	0.82[CEU][hapmap];0.94[CHB][hapmap];0.81[JPT][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9396214	0.86[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9396215	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9396218	0.95[ASN][1000 genomes]
rs9464389	0.82[ASN][1000 genomes]
rs9475709	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491933	chr6:56177722-57171010	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv830666	chr6:56243743-56419599	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56308800-56373800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:56315000-56347200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr6:56315000-56349800	Strong transcription	HSMM	muscle
4	chr6:56315600-56371000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr6:56315800-56329200	Weak transcription	Small Intestine	intestine
6	chr6:56316800-56337600	Weak transcription	Hela-S3	cervix
7	chr6:56317200-56342800	Strong transcription	Muscle Satellite Cultured Cells	--
8	chr6:56317600-56324200	Weak transcription	Brain Angular Gyrus	brain
9	chr6:56317800-56331200	Strong transcription	HSMMtube	muscle
10	chr6:56318000-56340600	Strong transcription	Fetal Intestine Large	intestine
11	chr6:56318600-56331000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr6:56318800-56325200	Strong transcription	HUVEC	blood vessel
13	chr6:56318800-56325800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr6:56318800-56332000	Strong transcription	Fetal Lung	lung
15	chr6:56319000-56325800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr6:56319000-56326000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr6:56319000-56331200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr6:56319000-56348200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr6:56319200-56331200	Strong transcription	Osteobl	bone
20	chr6:56319200-56340400	Strong transcription	NH-A	brain
21	chr6:56319200-56348400	Strong transcription	NHDF-Ad	bronchial
22	chr6:56319400-56329200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr6:56319400-56343600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr6:56319400-56344200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr6:56320000-56338800	Strong transcription	Liver	Liver
26	chr6:56320800-56325600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr6:56320800-56325800	Strong transcription	Adipose Nuclei	Adipose
28	chr6:56320800-56328600	Strong transcription	Brain Substantia Nigra	brain
29	chr6:56320800-56331200	Strong transcription	Brain Anterior Caudate	brain
30	chr6:56321000-56325400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr6:56321000-56325600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr6:56321000-56325600	Strong transcription	Fetal Muscle Trunk	muscle
33	chr6:56321000-56325600	Strong transcription	Rectal Mucosa Donor 29	rectum
34	chr6:56321000-56331000	Strong transcription	Stomach Smooth Muscle	stomach
35	chr6:56321000-56331200	Strong transcription	Fetal Muscle Leg	muscle
36	chr6:56321000-56331200	Strong transcription	Left Ventricle	heart
37	chr6:56321000-56331800	Strong transcription	Brain Hippocampus Middle	brain
38	chr6:56321000-56343400	Strong transcription	Duodenum Smooth Muscle	Duodenum
39	chr6:56321200-56325200	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr6:56321200-56343800	Strong transcription	HUES64 Cell Line	embryonic stem cell
41	chr6:56321400-56325200	Strong transcription	HUES6 Cell Line	embryonic stem cell
42	chr6:56321600-56325600	Strong transcription	Cortex derived primary cultured neurospheres	brain
43	chr6:56321800-56325200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr6:56321800-56325600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr6:56321800-56331800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr6:56322000-56324600	Strong transcription	ES-I3 Cell Line	embryonic stem cell
47	chr6:56322000-56325000	Strong transcription	Primary monocytes fromperipheralblood	blood
48	chr6:56322000-56325200	Strong transcription	Brain Inferior Temporal Lobe	brain
49	chr6:56322000-56325200	Strong transcription	Fetal Brain Male	brain
50	chr6:56322000-56325200	Strong transcription	Fetal Kidney	kidney

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links