Variant report

Variant	rs606894
Chromosome Location	chr6:56295657-56295658
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11753813	0.94[MEX][hapmap]
rs11758339	0.81[JPT][hapmap];0.94[MEX][hapmap];0.80[ASN][1000 genomes]
rs11759493	0.94[MEX][hapmap]
rs12174955	0.83[CHB][hapmap]
rs1535612	0.94[MEX][hapmap]
rs1547625	0.94[CHB][hapmap];0.88[JPT][hapmap];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17825773	0.94[CHB][hapmap];0.98[GIH][hapmap];0.82[JPT][hapmap];0.94[MEX][hapmap];0.93[TSI][hapmap];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2273973	0.94[MEX][hapmap]
rs2894837	0.88[CHB][hapmap];0.87[GIH][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap]
rs4236139	0.83[MEX][hapmap]
rs4236140	0.89[MEX][hapmap]
rs4283892	0.94[MEX][hapmap]
rs4454141	0.89[MEX][hapmap]
rs4715626	0.89[MEX][hapmap]
rs4715627	0.83[MEX][hapmap]
rs4715630	0.83[MEX][hapmap]
rs58705220	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs594435	0.85[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs607271	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6459161	0.94[MEX][hapmap]
rs656550	0.93[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs656988	0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs657057	0.88[CEU][hapmap];0.94[CHB][hapmap];0.98[GIH][hapmap];0.88[JPT][hapmap];0.85[MEX][hapmap];0.97[TSI][hapmap];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6911307	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6911502	0.94[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.94[ASN][1000 genomes]
rs6914325	0.91[ASN][1000 genomes]
rs6916287	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6927258	0.83[CHB][hapmap]
rs7741295	0.83[MEX][hapmap]
rs9296848	0.94[MEX][hapmap]
rs9349822	0.90[ASN][1000 genomes]
rs9349823	0.82[CHB][hapmap]
rs9357918	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9370531	0.80[ASN][1000 genomes]
rs9370533	0.83[CHB][hapmap]
rs9396210	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9396211	0.92[ASN][1000 genomes]
rs9396213	0.83[CHB][hapmap];0.94[MEX][hapmap]
rs9396214	0.94[MEX][hapmap]
rs9464388	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491933	chr6:56177722-57171010	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv830666	chr6:56243743-56419599	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv965727	chr6:56294729-56298343	Bivalent Enhancer ZNF genes & repeats Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs606894	TRAM2	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56295600-56295800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:56295600-56295800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin

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