Variant report

Variant	rs9396211
Chromosome Location	chr6:56310770-56310771
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:56298845..56301782-chr6:56308570..56311442,2	MCF-7	breast:
2	chr6:56308676..56311120-chr6:56312464..56314114,2	MCF-7	breast:
3	chr6:56302783..56304567-chr6:56307682..56311074,3	K562	blood:

Extended variants
information (count: 97 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs11751569	0.82[YRI][hapmap]
rs11753813	0.82[CEU][hapmap];0.81[ASN][1000 genomes]
rs11757910	0.80[YRI][hapmap]
rs11757941	0.82[YRI][hapmap]
rs11758339	1.00[CEU][hapmap];0.82[CHB][hapmap];0.81[JPT][hapmap];0.91[YRI][hapmap];0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11759493	0.95[CEU][hapmap];0.82[CHB][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11961668	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12174955	1.00[CEU][hapmap];0.88[CHB][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13204556	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13218268	0.82[YRI][hapmap]
rs1359068	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1359070	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1535612	0.82[CEU][hapmap];0.82[CHB][hapmap];0.81[ASN][1000 genomes]
rs1547625	0.89[CHB][hapmap];0.88[JPT][hapmap];0.88[ASN][1000 genomes]
rs1570492	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17825773	0.89[CHB][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs2273972	0.86[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2273973	0.82[CEU][hapmap];0.82[CHB][hapmap];0.81[ASN][1000 genomes]
rs2273974	0.95[CEU][hapmap];0.83[CHB][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2294697	0.82[YRI][hapmap]
rs2397221	0.82[YRI][hapmap]
rs2397226	0.83[CHB][hapmap];0.92[YRI][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2894837	0.82[CHB][hapmap]
rs34954984	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35671304	0.81[EUR][1000 genomes]
rs35926142	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4130060	0.90[CEU][hapmap];0.92[YRI][hapmap]
rs4143828	0.90[CEU][hapmap];1.00[YRI][hapmap]
rs4236139	0.81[CEU][hapmap]
rs4236140	0.95[CEU][hapmap]
rs4236141	0.82[CEU][hapmap]
rs4236144	0.90[CEU][hapmap]
rs4236145	0.95[CEU][hapmap]
rs4283892	0.95[CEU][hapmap];0.82[CHB][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4331988	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4454141	0.82[CEU][hapmap]
rs4499917	0.95[CEU][hapmap]
rs4544910	0.81[EUR][1000 genomes]
rs45486696	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4712132	0.95[CEU][hapmap]
rs4715625	0.95[CEU][hapmap];0.83[CHB][hapmap];0.81[EUR][1000 genomes]
rs4715626	0.82[CEU][hapmap]
rs4715627	0.82[CEU][hapmap]
rs4715629	0.82[CEU][hapmap]
rs4715630	0.95[CEU][hapmap];1.00[YRI][hapmap]
rs58705220	0.86[ASN][1000 genomes]
rs594435	0.85[CHB][hapmap];0.92[JPT][hapmap];0.92[ASN][1000 genomes]
rs595238	0.91[YRI][hapmap]
rs606894	0.92[ASN][1000 genomes]
rs607271	0.92[ASN][1000 genomes]
rs636389	0.91[YRI][hapmap]
rs6459161	0.86[CEU][hapmap];0.82[CHB][hapmap];0.89[EUR][1000 genomes]
rs6459163	0.90[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs656550	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs656988	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs657057	0.89[CHB][hapmap];0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs6904202	0.81[CEU][hapmap]
rs6911307	0.86[ASN][1000 genomes]
rs6911502	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6913572	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6914325	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6916287	0.94[ASN][1000 genomes]
rs6927258	0.95[CEU][hapmap];0.88[CHB][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6928601	0.82[EUR][1000 genomes]
rs721475	0.81[ASN][1000 genomes]
rs72877350	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7741295	0.95[CEU][hapmap];1.00[YRI][hapmap]
rs7746753	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7755220	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7755361	0.82[CEU][hapmap]
rs7759875	0.84[CEU][hapmap]
rs7761281	0.85[CEU][hapmap]
rs7762629	0.81[CEU][hapmap];0.82[YRI][hapmap]
rs7775847	0.82[YRI][hapmap]
rs9296848	0.95[CEU][hapmap];0.82[CHB][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9296850	0.90[CEU][hapmap]
rs9349822	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9349823	1.00[CEU][hapmap];0.88[CHB][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9349824	0.82[EUR][1000 genomes]
rs9349825	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9357918	0.84[ASN][1000 genomes]
rs9357922	0.80[CEU][hapmap]
rs9370531	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9370533	0.86[CEU][hapmap];0.88[CHB][hapmap]
rs9370534	1.00[CEU][hapmap];0.82[CHB][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9370535	0.95[CEU][hapmap];0.91[YRI][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9382631	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9396210	0.94[ASN][1000 genomes]
rs9396213	0.86[CEU][hapmap];0.88[CHB][hapmap];0.82[EUR][1000 genomes]
rs9396214	0.95[CEU][hapmap];0.82[CHB][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9396215	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9464388	0.85[ASN][1000 genomes]
rs9475709	0.81[ASN][1000 genomes]
rs9475713	0.82[CEU][hapmap]
rs9475714	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491933	chr6:56177722-57171010	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv830666	chr6:56243743-56419599	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56304200-56314800	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr6:56305600-56313000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:56305600-56315800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:56305600-56318600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:56305600-56319600	Weak transcription	HMEC	breast
6	chr6:56306600-56319000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:56307400-56313000	Weak transcription	Ovary	ovary
8	chr6:56308600-56311600	Enhancers	Fetal Muscle Leg	muscle
9	chr6:56308800-56373800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:56309000-56321000	Weak transcription	Fetal Muscle Trunk	muscle
11	chr6:56309400-56322600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr6:56309600-56311600	Enhancers	Stomach Smooth Muscle	stomach
13	chr6:56309600-56311800	Enhancers	Rectal Smooth Muscle	rectum
14	chr6:56309800-56315000	Weak transcription	HSMM	muscle
15	chr6:56310000-56311200	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr6:56310000-56315000	Weak transcription	Aorta	Aorta
17	chr6:56310200-56313400	Weak transcription	Fetal Heart	heart
18	chr6:56310200-56313400	Weak transcription	Right Atrium	heart
19	chr6:56310400-56315400	Weak transcription	NH-A	brain
20	chr6:56310400-56321000	Weak transcription	Left Ventricle	heart
21	chr6:56310600-56310800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr6:56310600-56310800	Flanking Active TSS	Colon Smooth Muscle	Colon
23	chr6:56310600-56310800	Enhancers	HepG2	liver
24	chr6:56310600-56311000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr6:56310600-56311600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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