Variant report

No.	Distal block	Cell Line	Cell type
1	chr6:56302994..56305596-chr6:56305706..56307687,2	MCF-7	breast:
2	chr6:56243942..56247033-chr6:56303376..56305321,3	MCF-7	breast:
3	chr6:56303405..56305333-chr6:56316086..56317917,2	MCF-7	breast:
4	chr6:56300059..56302914-chr6:56304069..56306007,3	MCF-7	breast:
5	chr6:56302578..56305844-chr6:56326114..56330070,4	MCF-7	breast:
6	chr6:56247738..56250356-chr6:56304271..56306407,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151914	Chromatin interaction

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs17825773	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2894837	0.83[CEU][hapmap];0.83[CHB][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs58705220	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59101638	0.80[ASN][1000 genomes]
rs594435	0.87[CHB][hapmap];0.85[JPT][hapmap];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs606894	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs607271	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6459161	0.82[JPT][hapmap]
rs656550	0.87[CHB][hapmap];0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs656988	0.94[CHB][hapmap];0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs657057	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6911307	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6911502	0.89[CHB][hapmap];0.88[JPT][hapmap];0.87[ASN][1000 genomes]
rs6914325	0.87[ASN][1000 genomes]
rs6916287	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7749370	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9349822	0.83[ASN][1000 genomes]
rs9357918	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9396210	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9396211	0.88[ASN][1000 genomes]
rs9464388	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491933	chr6:56177722-57171010	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv830666	chr6:56243743-56419599	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56303200-56309600	Weak transcription	Rectal Smooth Muscle	rectum
2	chr6:56304200-56314800	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr6:56304400-56307200	Enhancers	Fetal Intestine Large	intestine
4	chr6:56304800-56305600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr6:56304800-56305600	Enhancers	HMEC	breast
6	chr6:56304800-56305600	Enhancers	NHEK	skin
7	chr6:56304800-56307400	Enhancers	Fetal Intestine Small	intestine
8	chr6:56304800-56309600	Weak transcription	Colon Smooth Muscle	Colon
9	chr6:56305000-56305400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr6:56305000-56305800	Enhancers	Stomach Mucosa	stomach
11	chr6:56305000-56307400	Enhancers	Liver	Liver
12	chr6:56305200-56305400	Enhancers	NH-A	brain
13	chr6:56305200-56305600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr6:56305200-56305600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr6:56305200-56305600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr6:56305200-56305600	Enhancers	Gastric	stomach
17	chr6:56305200-56305800	Enhancers	Stomach Smooth Muscle	stomach
18	chr6:56305200-56306000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr6:56305200-56306000	Enhancers	Duodenum Mucosa	Duodenum
20	chr6:56305200-56306000	Enhancers	Pancreas	Pancrea

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