Variant report

Variant	rs6911307
Chromosome Location	chr6:56297437-56297438
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:56297393-56297443	HAEpiC	amniotic membrane:	n/a
2	chr6:56297393-56297443	HepG2	liver:	n/a
3	chr6:56297393-56297443	PFSK-1	brain:	n/a
4	chr6:56297393-56297443	NH-A	brain:	n/a
5	chr6:56297393-56297443	SAEC	small airway:	n/a
6	chr6:56297393-56297443	HL-60	blood:	n/a
7	chr6:56297393-56297443	T-47D	breast:	n/a
8	chr6:56297393-56297443	HEK293	kidney:	embryo
9	chr6:56297393-56297443	GM12878	blood:	n/a
10	chr6:56297393-56297443	NHDF-neo	bronchial:	n/a
11	chr6:56297393-56297443	MCF-7	breast:	n/a
12	chr6:56297393-56297443	Caco-2	colon:	n/a
13	chr6:56297393-56297443	HRE	kidney:	n/a
14	chr6:56297393-56297443	HRPEpiC	eye:	n/a
15	chr6:56297393-56297443	PrEC	prostate:	n/a
16	chr6:56297393-56297443	HMEC	breast:	n/a
17	chr6:56297393-56297443	HNPCEpiC	eye:	n/a
18	chr6:56297393-56297443	IMR90	lung:	fetal
19	chr6:56297393-56297443	NT2-D1	testis:	n/a
20	chr6:56297393-56297443	LNCaP	prostate:	n/a
21	chr6:56297393-56297443	HUVEC	blood vessel:	n/a
22	chr6:56297393-56297443	HCM	heart:	n/a
23	chr6:56297393-56297443	SK-N-SH_RA	brain:	n/a
24	chr6:56297393-56297443	AG04450	lung:	fetal
25	chr6:56297393-56297443	K562	blood:	n/a
26	chr6:56297393-56297443	HEEpiC	esophagus:	n/a
27	chr6:56297393-56297443	H1-hESC	embryonic stem cell:	embryo
28	chr6:56297393-56297443	SK-N-MC	brain:	n/a
29	chr6:56297393-56297443	AG10803	skin:	n/a
30	chr6:56297393-56297443	HCT-116	colon:	n/a
31	chr6:56297393-56297443	GM12891	blood:	n/a
32	chr6:56297393-56297443	PANC-1	pancreas:	n/a
33	chr6:56297393-56297443	NB4	blood:	n/a
34	chr6:56297393-56297443	SK-N-SH	brain:	n/a
35	chr6:56297393-56297443	AG04449	skin:	fetal
36	chr6:56297393-56297443	BJ	skin:	n/a
37	chr6:56297393-56297443	HCF	heart:	n/a
38	chr6:56297393-56297443	NHBE	bronchial:	n/a
39	chr6:56297393-56297443	CMK	blood:	n/a
40	chr6:56297393-56297443	GM06990	blood:	n/a
41	chr6:56297393-56297443	Hepatocyte	liver:	n/a
42	chr6:56297393-56297443	U87	brain:	n/a
43	chr6:56297393-56297443	RPTEC	kidney:	n/a
44	chr6:56297393-56297443	ECC-1	luminal epithelium:	n/a
45	chr6:56297393-56297443	HRCEpiC	kidney:	n/a
46	chr6:56297393-56297443	HCPEpiC	choroid plexus:	n/a
47	chr6:56297393-56297443	GM19239	blood:	n/a
48	chr6:56297393-56297443	HIPEpiC	eye:	n/a
49	chr6:56297393-56297443	AoSMC	blood vessel:	n/a
50	chr6:56297393-56297443	Jurkat	blood:	n/a

No data

Variant related genes	Relation type
ENSG00000266793	CpG island

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1547625	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17825773	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2894837	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs58705220	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs594435	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs606894	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs607271	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs656550	0.87[ASN][1000 genomes]
rs656988	0.87[ASN][1000 genomes]
rs657057	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6911502	0.89[ASN][1000 genomes]
rs6914325	0.85[ASN][1000 genomes]
rs6916287	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7749370	0.81[EUR][1000 genomes]
rs9349822	0.81[ASN][1000 genomes]
rs9357918	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9396210	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9396211	0.86[ASN][1000 genomes]
rs9464388	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491933	chr6:56177722-57171010	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv830666	chr6:56243743-56419599	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv965727	chr6:56294729-56298343	Bivalent Enhancer ZNF genes & repeats Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56296800-56297600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr6:56297000-56297800	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr6:56297400-56297800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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