Variant report
| Variant | rs594435 |
|---|---|
| Chromosome Location | chr6:56295538-56295539 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:56293649..56295565-chr6:56296987..56298502,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000220666 | Chromatin interaction |
| ENSG00000266793 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs11758339 | 0.84[JPT][hapmap];0.80[ASN][1000 genomes] |
| rs1547625 | 0.87[CHB][hapmap];0.85[JPT][hapmap];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs17825773 | 0.86[CHB][hapmap];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs58705220 | 0.84[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs606894 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs607271 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs656550 | 0.81[CHB][hapmap];0.92[JPT][hapmap];0.81[AMR][1000 genomes];0.96[ASN][1000 genomes] |
| rs656988 | 0.85[CHB][hapmap];0.92[JPT][hapmap];0.81[AMR][1000 genomes];0.96[ASN][1000 genomes] |
| rs657057 | 0.86[CHB][hapmap];0.85[JPT][hapmap];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs6911307 | 0.88[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs6911502 | 0.85[CHB][hapmap];0.92[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs6914325 | 0.91[ASN][1000 genomes] |
| rs6916287 | 0.84[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs9349822 | 0.90[ASN][1000 genomes] |
| rs9357918 | 0.97[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs9370531 | 0.80[ASN][1000 genomes] |
| rs9396210 | 0.88[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs9396211 | 0.92[ASN][1000 genomes] |
| rs9464388 | 0.84[EUR][1000 genomes];0.86[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv491933 | chr6:56177722-57171010 | Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 51 gene(s) | inside rSNPs | diseases |
| 2 | nsv830666 | chr6:56243743-56419599 | Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 9 gene(s) | inside rSNPs | diseases |
| 3 | nsv965727 | chr6:56294729-56298343 | Bivalent Enhancer ZNF genes & repeats Weak transcription Enhancers | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
