Variant report

Variant	rs6916287
Chromosome Location	chr6:56298039-56298040
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:56298004-56298054	Hela-S3	cervix:	n/a
2	chr6:56298004-56298054	AG09309	skin:	n/a
3	chr6:56298004-56298054	AoSMC	blood vessel:	n/a
4	chr6:56298004-56298054	ECC-1	luminal epithelium:	n/a
5	chr6:56298004-56298054	HRPEpiC	eye:	n/a
6	chr6:56298004-56298054	LNCaP	prostate:	n/a
7	chr6:56298004-56298054	HL-60	blood:	n/a
8	chr6:56298004-56298054	K562	blood:	n/a
9	chr6:56298004-56298054	IMR90	lung:	fetal
10	chr6:56298004-56298054	HAEpiC	amniotic membrane:	n/a
11	chr6:56298004-56298054	GM06990	blood:	n/a
12	chr6:56298004-56298054	Jurkat	blood:	n/a
13	chr6:56298004-56298054	GM12891	blood:	n/a
14	chr6:56298004-56298054	HMEC	breast:	n/a
15	chr6:56298004-56298054	MCF10A-Er-Src	breast:	n/a
16	chr6:56298004-56298054	HRE	kidney:	n/a
17	chr6:56298004-56298054	GM12892	blood:	n/a
18	chr6:56298004-56298054	SKMC	muscle:	n/a
19	chr6:56298004-56298054	HRCEpiC	kidney:	n/a
20	chr6:56298004-56298054	MCF-7	breast:	n/a
21	chr6:56298004-56298054	HCT-116	colon:	n/a
22	chr6:56298004-56298054	GM19239	blood:	n/a
23	chr6:56298004-56298054	SAEC	small airway:	n/a
24	chr6:56298004-56298054	U87	brain:	n/a
25	chr6:56298004-56298054	HCPEpiC	choroid plexus:	n/a
26	chr6:56298004-56298054	PFSK-1	brain:	n/a
27	chr6:56298004-56298054	HEEpiC	esophagus:	n/a
28	chr6:56298004-56298054	HPAEpiC	pulmonary alveolar:	n/a
29	chr6:56298004-56298054	AG10803	skin:	n/a
30	chr6:56298004-56298054	HUVEC	blood vessel:	n/a
31	chr6:56298004-56298054	SK-N-SH_RA	brain:	n/a
32	chr6:56298004-56298054	SK-N-SH	brain:	n/a
33	chr6:56298004-56298054	HIPEpiC	eye:	n/a
34	chr6:56298004-56298054	PrEC	prostate:	n/a
35	chr6:56298004-56298054	NHDF-neo	bronchial:	n/a
36	chr6:56298004-56298054	NB4	blood:	n/a
37	chr6:56298004-56298054	NT2-D1	testis:	n/a
38	chr6:56298004-56298054	HEK293	kidney:	embryo
39	chr6:56298004-56298054	A549	lung:	n/a
40	chr6:56298004-56298054	BE2_C	brain:	n/a
41	chr6:56298004-56298054	HCF	heart:	n/a
42	chr6:56298004-56298054	H1-hESC	embryonic stem cell:	embryo
43	chr6:56298004-56298054	RPTEC	kidney:	n/a
44	chr6:56298004-56298054	ProgFib	skin:	n/a
45	chr6:56298004-56298054	HCM	heart:	n/a
46	chr6:56298004-56298054	AG04450	lung:	fetal
47	chr6:56298004-56298054	AG09319	gingival:	n/a
48	chr6:56298004-56298054	ovcar-3	ovarian:	n/a
49	chr6:56298004-56298054	NHBE	bronchial:	n/a
50	chr6:56298004-56298054	BJ	skin:	n/a

No data

Variant related genes	Relation type
RCC2P7	CpG island
ENSG00000266793	CpG island

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1547625	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1570492	0.81[ASN][1000 genomes]
rs17825773	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58705220	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs594435	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs606894	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs607271	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs656550	0.93[ASN][1000 genomes]
rs656988	0.93[ASN][1000 genomes]
rs657057	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6911307	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6911502	0.95[ASN][1000 genomes]
rs6914325	0.93[ASN][1000 genomes]
rs9349822	0.89[ASN][1000 genomes]
rs9357918	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9382631	0.81[ASN][1000 genomes]
rs9396210	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9396211	0.94[ASN][1000 genomes]
rs9464388	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491933	chr6:56177722-57171010	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv830666	chr6:56243743-56419599	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv965727	chr6:56294729-56298343	Bivalent Enhancer ZNF genes & repeats Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56297800-56298200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:56298000-56298400	ZNF genes & repeats	Fetal Intestine Large	intestine

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