Variant report
| Variant | rs9396210 |
|---|---|
| Chromosome Location | chr6:56297896-56297897 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs1547625 | 0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs1570492 | 0.81[ASN][1000 genomes] |
| rs17825773 | 0.95[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs2894837 | 0.84[EUR][1000 genomes] |
| rs58705220 | 0.94[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs594435 | 0.88[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs606894 | 0.88[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs607271 | 0.88[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs656550 | 0.93[ASN][1000 genomes] |
| rs656988 | 0.93[ASN][1000 genomes] |
| rs657057 | 0.98[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs6911307 | 0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs6911502 | 0.95[ASN][1000 genomes] |
| rs6914325 | 0.93[ASN][1000 genomes] |
| rs6916287 | 0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7749370 | 0.81[EUR][1000 genomes] |
| rs9349822 | 0.89[ASN][1000 genomes] |
| rs9357918 | 0.85[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs9382631 | 0.81[ASN][1000 genomes] |
| rs9396211 | 0.94[ASN][1000 genomes] |
| rs9464388 | 0.94[EUR][1000 genomes];0.85[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv491933 | chr6:56177722-57171010 | Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 51 gene(s) | inside rSNPs | diseases |
| 2 | nsv830666 | chr6:56243743-56419599 | Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 9 gene(s) | inside rSNPs | diseases |
| 3 | nsv965727 | chr6:56294729-56298343 | Bivalent Enhancer ZNF genes & repeats Weak transcription Enhancers | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:56297800-56298200 | Enhancers | iPS DF 19.11 Cell Line | embryonic stem cell |
