Variant report

Variant	rs6914325
Chromosome Location	chr6:56313577-56313578
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:56308676..56311120-chr6:56312464..56314114,2	MCF-7	breast:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs11758339	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11759493	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11961668	0.81[EUR][1000 genomes]
rs12174955	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13204556	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1359068	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1359070	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1535612	0.80[ASN][1000 genomes]
rs1547625	0.87[ASN][1000 genomes]
rs1570492	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17825773	0.84[ASN][1000 genomes]
rs2273972	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2273974	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2397226	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34954984	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35671304	0.81[EUR][1000 genomes]
rs35926142	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4283892	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4331988	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4544910	0.81[EUR][1000 genomes]
rs45486696	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4715625	0.81[EUR][1000 genomes]
rs58705220	0.85[ASN][1000 genomes]
rs594435	0.91[ASN][1000 genomes]
rs606894	0.91[ASN][1000 genomes]
rs607271	0.91[ASN][1000 genomes]
rs6459161	0.89[EUR][1000 genomes]
rs6459163	0.90[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs656550	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs656988	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs657057	0.83[ASN][1000 genomes]
rs6911307	0.85[ASN][1000 genomes]
rs6911502	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6913572	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6916287	0.93[ASN][1000 genomes]
rs6927258	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6928601	0.82[EUR][1000 genomes]
rs72877350	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7746753	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7755220	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9296848	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9349822	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9349823	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9349824	0.82[EUR][1000 genomes]
rs9349825	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9357918	0.83[ASN][1000 genomes]
rs9370531	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9370534	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9370535	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9382631	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9396210	0.93[ASN][1000 genomes]
rs9396211	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9396213	0.82[EUR][1000 genomes]
rs9396214	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9396215	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9464388	0.86[ASN][1000 genomes]
rs9475709	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491933	chr6:56177722-57171010	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv830666	chr6:56243743-56419599	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56304200-56314800	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr6:56305600-56315800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr6:56305600-56318600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:56305600-56319600	Weak transcription	HMEC	breast
5	chr6:56306600-56319000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr6:56308800-56373800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:56309000-56321000	Weak transcription	Fetal Muscle Trunk	muscle
8	chr6:56309400-56322600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr6:56309800-56315000	Weak transcription	HSMM	muscle
10	chr6:56310000-56315000	Weak transcription	Aorta	Aorta
11	chr6:56310400-56315400	Weak transcription	NH-A	brain
12	chr6:56310400-56321000	Weak transcription	Left Ventricle	heart
13	chr6:56310800-56314600	Weak transcription	HepG2	liver
14	chr6:56311000-56315600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr6:56311000-56315800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr6:56311000-56315800	Weak transcription	Psoas Muscle	Psoas
17	chr6:56311000-56316200	Weak transcription	Osteobl	bone
18	chr6:56311400-56315000	Weak transcription	NHDF-Ad	bronchial
19	chr6:56311400-56315400	Weak transcription	Right Ventricle	heart
20	chr6:56311600-56315200	Weak transcription	HSMMtube	muscle
21	chr6:56311600-56315400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr6:56311600-56315400	Weak transcription	Fetal Muscle Leg	muscle
23	chr6:56311600-56316000	Weak transcription	Fetal Stomach	stomach
24	chr6:56311600-56321000	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr6:56311800-56315200	Weak transcription	Rectal Smooth Muscle	rectum
26	chr6:56312800-56314400	Enhancers	Fetal Lung	lung
27	chr6:56313000-56314000	Enhancers	Colon Smooth Muscle	Colon
28	chr6:56313000-56314000	Enhancers	Ovary	ovary
29	chr6:56313200-56322000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr6:56313200-56323800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr6:56313400-56314000	Enhancers	Right Atrium	heart
32	chr6:56313400-56314000	Enhancers	Stomach Smooth Muscle	stomach
33	chr6:56313400-56314200	Enhancers	Fetal Heart	heart
34	chr6:56313400-56315200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr6:56313400-56319000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links