Variant report

Variant	rs9361840
Chromosome Location	chr6:82254932-82254933
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12663772	0.83[AMR][1000 genomes]
rs1341220	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13437553	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1570112	0.83[AMR][1000 genomes]
rs1917063	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4324818	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6454229	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs719144	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7763102	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7771821	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9344191	0.83[AMR][1000 genomes]
rs9344208	0.84[AMR][1000 genomes]
rs9344211	0.81[AMR][1000 genomes]
rs9359496	0.80[CEU][hapmap];0.81[JPT][hapmap];0.83[AMR][1000 genomes]
rs9361847	0.81[AMR][1000 genomes]
rs9443928	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604087	chr6:81792413-82326091	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82244000-82259000	Weak transcription	Placenta	Placenta
2	chr6:82253200-82264400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:82253400-82260800	Weak transcription	Placenta Amnion	Placenta Amnion

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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