Variant report

Variant	rs13437553
Chromosome Location	chr6:82304235-82304236
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10806229	0.82[EUR][1000 genomes]
rs1341220	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1917063	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4324818	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6454229	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6454237	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs719144	0.83[ASW][hapmap];0.87[CHD][hapmap];0.83[TSI][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7763102	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7771821	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9294235	0.80[EUR][1000 genomes]
rs9341895	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9344208	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9344211	0.82[EUR][1000 genomes]
rs9361840	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9361847	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604087	chr6:81792413-82326091	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82300400-82304400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:82303200-82304800	Weak transcription	Placenta	Placenta
3	chr6:82304200-82305000	Enhancers	Fetal Intestine Large	intestine

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links