Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10806229	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11752435	0.80[AMR][1000 genomes]
rs12214288	0.80[AMR][1000 genomes]
rs12663772	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1341220	0.87[AMR][1000 genomes]
rs13437553	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1570112	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1917063	0.81[AMR][1000 genomes]
rs4324818	0.81[AMR][1000 genomes]
rs719144	0.81[AMR][1000 genomes]
rs7762573	0.81[EUR][1000 genomes]
rs7763102	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7771821	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9294235	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9344191	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9344208	0.80[AMR][1000 genomes]
rs9344211	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9344214	0.81[AMR][1000 genomes]
rs9344215	0.81[AMR][1000 genomes]
rs9359496	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9361840	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9443928	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9449361	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604087	chr6:81792413-82326091	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82281800-82285000	Weak transcription	Rectal Smooth Muscle	rectum
2	chr6:82282200-82285200	Weak transcription	Fetal Heart	heart
3	chr6:82282400-82285000	Weak transcription	Fetal Stomach	stomach
4	chr6:82282600-82285000	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr6:82282800-82284600	Weak transcription	Colon Smooth Muscle	Colon

Quick Search: