Variant report

Variant	rs1917063
Chromosome Location	chr6:82323207-82323208
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:82316769..82319258-chr6:82322440..82324467,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10806229	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11752435	0.84[EUR][1000 genomes]
rs1341220	0.88[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13437553	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4324818	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6454229	0.81[AMR][1000 genomes]
rs6454237	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs719144	0.93[CEU][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7763102	0.81[AMR][1000 genomes]
rs7771821	0.81[AMR][1000 genomes]
rs9294235	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9341895	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9344208	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9344211	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9344214	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9344215	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9361840	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9361847	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9449361	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604087	chr6:81792413-82326091	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv517168	chr6:82319174-82325529	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82318000-82356600	Weak transcription	Aorta	Aorta
2	chr6:82320400-82323800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:82322000-82324000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr6:82322000-82325600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr6:82322600-82323600	Enhancers	Dnd41	blood
6	chr6:82322800-82324400	Enhancers	Osteobl	bone
7	chr6:82323000-82323600	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr6:82323000-82323800	Enhancers	HUVEC	blood vessel
9	chr6:82323000-82324000	Enhancers	NH-A	brain
10	chr6:82323000-82324400	Enhancers	NHDF-Ad	bronchial
11	chr6:82323000-82324400	Enhancers	NHLF	lung
12	chr6:82323000-82324800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:82323000-82325000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr6:82323000-82325000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr6:82323200-82323400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
16	chr6:82323200-82323600	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr6:82323200-82324200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr6:82323200-82324200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr6:82323200-82324200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr6:82323200-82324400	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr6:82323200-82324400	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr6:82323200-82324400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr6:82323200-82324400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr6:82323200-82324400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr6:82323200-82324400	Enhancers	NHEK	skin

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