Variant report

Variant	rs9370494
Chromosome Location	chr6:56106540-56106541
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:56105700..56109003-chr6:56111761..56115485,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000124749	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10498810	0.81[EUR][1000 genomes]
rs1925188	0.81[EUR][1000 genomes]
rs3807013	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3846928	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72645373	0.81[EUR][1000 genomes]
rs9396185	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs994039	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885911	chr6:55789704-56143231	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56100200-56111600	Weak transcription	Right Atrium	heart
2	chr6:56100400-56107400	Weak transcription	A549	lung
3	chr6:56100600-56109400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:56103600-56111600	Weak transcription	Left Ventricle	heart
5	chr6:56104200-56106800	Weak transcription	Fetal Kidney	kidney
6	chr6:56104200-56110400	Weak transcription	Fetal Muscle Trunk	muscle
7	chr6:56104800-56106600	Enhancers	Fetal Muscle Leg	muscle
8	chr6:56104800-56109000	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr6:56105000-56106600	Enhancers	Rectal Smooth Muscle	rectum
10	chr6:56105000-56106800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr6:56105400-56106600	Enhancers	Brain Hippocampus Middle	brain
12	chr6:56105400-56107000	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr6:56105400-56107400	Active TSS	Aorta	Aorta
14	chr6:56105600-56106600	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr6:56105800-56106800	Enhancers	Brain Cingulate Gyrus	brain
16	chr6:56106000-56106600	Enhancers	HSMMtube	muscle
17	chr6:56106000-56106800	Weak transcription	Brain Substantia Nigra	brain
18	chr6:56106000-56106800	Enhancers	Colon Smooth Muscle	Colon
19	chr6:56106000-56111400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr6:56106200-56107400	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr6:56106200-56109000	Enhancers	Liver	Liver
22	chr6:56106200-56110000	Enhancers	Fetal Lung	lung
23	chr6:56106200-56110200	Weak transcription	Fetal Stomach	stomach
24	chr6:56106200-56111000	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr6:56106200-56111600	Weak transcription	Ovary	ovary
26	chr6:56106400-56106600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr6:56106400-56106600	Enhancers	Stomach Smooth Muscle	stomach
28	chr6:56106400-56109800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr6:56106400-56111600	Weak transcription	Psoas Muscle	Psoas

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