Variant report

Variant	rs3846928
Chromosome Location	chr6:56122276-56122277
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:56120518..56123285-chr6:56126655..56128230,2	MCF-7	breast:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10498810	1.00[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10948981	0.84[ASN][1000 genomes]
rs10948988	0.84[AFR][1000 genomes]
rs12525967	0.82[ASN][1000 genomes]
rs12526228	0.84[AFR][1000 genomes]
rs12530020	0.81[ASN][1000 genomes]
rs12665485	0.81[ASN][1000 genomes]
rs1925160	0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs1925187	0.82[ASN][1000 genomes]
rs1925188	1.00[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2328693	0.84[ASN][1000 genomes]
rs2397210	0.82[ASN][1000 genomes]
rs2397212	0.80[ASN][1000 genomes]
rs2397213	0.80[ASN][1000 genomes]
rs3807013	1.00[CEU][hapmap];0.95[JPT][hapmap];0.85[YRI][hapmap];0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3846927	0.84[ASN][1000 genomes]
rs3846929	0.84[ASN][1000 genomes]
rs3846931	0.84[ASN][1000 genomes]
rs4119562	0.84[ASN][1000 genomes]
rs4119563	0.84[ASN][1000 genomes]
rs4236138	0.83[ASN][1000 genomes]
rs4435945	0.84[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs4712121	0.90[CHB][hapmap];0.95[JPT][hapmap];0.88[YRI][hapmap];0.91[ASN][1000 genomes]
rs4715602	0.82[ASN][1000 genomes]
rs4715603	0.82[ASN][1000 genomes]
rs4715606	0.83[ASN][1000 genomes]
rs55734123	0.82[ASN][1000 genomes]
rs60619715	0.84[AFR][1000 genomes]
rs66796842	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67454631	0.82[ASN][1000 genomes]
rs72645373	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72645374	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7745111	0.80[ASN][1000 genomes]
rs7759570	0.82[ASN][1000 genomes]
rs9349807	0.80[ASN][1000 genomes]
rs9349809	0.92[ASN][1000 genomes]
rs9370494	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9370495	0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs9370513	0.81[AFR][1000 genomes]
rs9382597	0.82[ASN][1000 genomes]
rs9382599	0.82[ASN][1000 genomes]
rs9382600	0.97[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9382601	0.80[ASN][1000 genomes]
rs9382603	0.80[ASN][1000 genomes]
rs9382604	0.80[ASN][1000 genomes]
rs9382606	0.89[ASN][1000 genomes]
rs9396185	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs994039	1.00[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs994040	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885911	chr6:55789704-56143231	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56113400-56123800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:56117200-56123000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr6:56120600-56123200	Weak transcription	Fetal Lung	lung
4	chr6:56120600-56123800	Weak transcription	Fetal Kidney	kidney
5	chr6:56120800-56122800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:56120800-56123000	Weak transcription	Fetal Muscle Leg	muscle
7	chr6:56120800-56123200	Weak transcription	HSMMtube	muscle
8	chr6:56120800-56123600	Weak transcription	Fetal Brain Male	brain
9	chr6:56120800-56129800	Weak transcription	Aorta	Aorta
10	chr6:56122200-56124400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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