Variant report

Variant	rs3846929
Chromosome Location	chr6:56123574-56123575
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:56123260..56125074-chr6:56128242..56130559,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10948981	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12525967	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12530020	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12665485	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1925158	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1925160	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1925187	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1925188	0.82[ASN][1000 genomes]
rs2328693	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2397210	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2397212	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2397213	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3846927	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3846928	0.84[ASN][1000 genomes]
rs3846931	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4119562	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4119563	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4715602	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4715603	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55734123	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66796842	0.80[ASN][1000 genomes]
rs67454631	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72645374	0.80[ASN][1000 genomes]
rs7745111	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7759570	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9349807	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9370495	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9382597	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9382599	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9382601	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9382603	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9382604	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9396185	0.84[ASN][1000 genomes]
rs994039	0.81[ASN][1000 genomes]
rs994040	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885911	chr6:55789704-56143231	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56113400-56123800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:56120600-56123800	Weak transcription	Fetal Kidney	kidney
3	chr6:56120800-56123600	Weak transcription	Fetal Brain Male	brain
4	chr6:56120800-56129800	Weak transcription	Aorta	Aorta
5	chr6:56122200-56124400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:56122800-56123600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr6:56123000-56123800	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr6:56123000-56124800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr6:56123000-56125200	Enhancers	Muscle Satellite Cultured Cells	--
10	chr6:56123000-56125200	Enhancers	Fetal Muscle Leg	muscle
11	chr6:56123200-56125000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr6:56123200-56125200	Enhancers	Fetal Lung	lung
13	chr6:56123200-56125200	Enhancers	HSMMtube	muscle
14	chr6:56123400-56124400	Weak transcription	Osteobl	bone
15	chr6:56123400-56124600	Weak transcription	NHLF	lung
16	chr6:56123400-56124800	Enhancers	iPS-20b Cell Line	embryonic stem cell

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