Variant report

Variant	rs72645374
Chromosome Location	chr6:56144358-56144359
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr6:56144333-56144951	HCT-116	colon:	n/a	chr6:56144413-56144423 chr6:56144412-56144424 chr6:56144413-56144423 chr6:56144413-56144423 chr6:56144736-56144747 chr6:56144414-56144422 chr6:56144413-56144423
2	GATA3	chr6:56143969-56144978	SK-N-SH	brain:	n/a	chr6:56144638-56144649
3	PBX3	chr6:56144119-56144875	SK-N-SH	brain:	n/a	n/a
4	SP1	chr6:56144129-56145053	A549	lung:	n/a	n/a
5	NFIC	chr6:56143989-56144681	SK-N-SH	brain:	n/a	n/a
6	EP300	chr6:56144109-56144439	SK-N-SH_RA	brain:	n/a	n/a
7	GATA3	chr6:56143983-56144977	SK-N-SH	brain:	n/a	chr6:56144638-56144649
8	JUND	chr6:56144067-56144912	SK-N-SH	brain:	n/a	chr6:56144413-56144423 chr6:56144412-56144424 chr6:56144413-56144423 chr6:56144413-56144423 chr6:56144736-56144747 chr6:56144414-56144422 chr6:56144413-56144423
9	EP300	chr6:56143943-56144727	SK-N-SH	brain:	n/a	n/a
10	SP1	chr6:56144277-56145126	HCT-116	colon:	n/a	n/a
11	FOSL1	chr6:56144314-56145071	HCT-116	colon:	n/a	chr6:56144413-56144423 chr6:56144412-56144424 chr6:56144413-56144423 chr6:56144413-56144423 chr6:56144414-56144422 chr6:56144413-56144423
12	TEAD4	chr6:56144061-56144513	SK-N-SH	brain:	n/a	n/a
13	SP1	chr6:56144124-56145013	A549	lung:	n/a	n/a
14	TCF12	chr6:56143978-56144796	SK-N-SH	brain:	n/a	n/a
15	POLR2A	chr6:56144144-56144387	SK-N-SH	brain:	n/a	n/a
16	TCF12	chr6:56143986-56145086	A549	lung:	n/a	n/a
17	EP300	chr6:56144343-56144992	A549	lung:	n/a	n/a
18	NFIC	chr6:56144141-56144417	SK-N-SH	brain:	n/a	n/a
19	RAD21	chr6:56144145-56144413	SK-N-SH_RA	brain:	n/a	chr6:56144270-56144283
20	FOSL2	chr6:56144090-56144871	SK-N-SH	brain:	n/a	chr6:56144413-56144423 chr6:56144412-56144424 chr6:56144413-56144423 chr6:56144413-56144423 chr6:56144414-56144422 chr6:56144413-56144423
21	PBX3	chr6:56144147-56144862	SK-N-SH	brain:	n/a	n/a
22	FOSL2	chr6:56144135-56145053	A549	lung:	n/a	chr6:56144413-56144423 chr6:56144412-56144424 chr6:56144413-56144423 chr6:56144413-56144423 chr6:56144414-56144422 chr6:56144413-56144423
23	BCL3	chr6:56144336-56144921	A549	lung:	n/a	n/a
24	EP300	chr6:56144194-56145104	A549	lung:	n/a	n/a
25	GATA3	chr6:56144007-56145142	A549	lung:	n/a	chr6:56144638-56144649
26	TCF12	chr6:56144009-56144983	SK-N-SH	brain:	n/a	n/a
27	EP300	chr6:56144124-56144547	SK-N-SH_RA	brain:	n/a	n/a

Variant related genes	Relation type
ENSG00000219095	TF binding region

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10498810	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10948981	0.80[ASN][1000 genomes]
rs10948988	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs12525967	0.82[ASN][1000 genomes]
rs12526228	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1925160	0.80[ASN][1000 genomes]
rs1925187	0.82[ASN][1000 genomes]
rs1925188	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2328693	0.80[ASN][1000 genomes]
rs2397210	0.82[ASN][1000 genomes]
rs2397212	0.84[ASN][1000 genomes]
rs2397213	0.84[ASN][1000 genomes]
rs3807013	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3846927	0.80[ASN][1000 genomes]
rs3846928	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3846929	0.80[ASN][1000 genomes]
rs3846931	0.80[ASN][1000 genomes]
rs4119562	0.80[ASN][1000 genomes]
rs4119563	0.80[ASN][1000 genomes]
rs4236138	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4435945	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4712121	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4715602	0.82[ASN][1000 genomes]
rs4715603	0.82[ASN][1000 genomes]
rs4715606	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs55734123	0.82[ASN][1000 genomes]
rs60619715	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs66796842	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67454631	0.82[ASN][1000 genomes]
rs72645373	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7745111	0.84[ASN][1000 genomes]
rs7759570	0.82[ASN][1000 genomes]
rs9349807	0.84[ASN][1000 genomes]
rs9349809	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9370495	0.82[ASN][1000 genomes]
rs9370506	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9370511	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs9370513	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs9382597	0.82[ASN][1000 genomes]
rs9382599	0.82[ASN][1000 genomes]
rs9382600	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9382601	0.81[ASN][1000 genomes]
rs9382603	0.84[ASN][1000 genomes]
rs9382604	0.84[ASN][1000 genomes]
rs9382606	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9382617	0.90[AMR][1000 genomes]
rs9396185	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs994039	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56142600-56145000	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr6:56142800-56144400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:56142800-56144600	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr6:56142800-56144800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr6:56143400-56145200	Weak transcription	Fetal Muscle Leg	muscle
6	chr6:56143600-56145400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:56143600-56156200	Weak transcription	Fetal Lung	lung
8	chr6:56143800-56144800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr6:56143800-56156200	Weak transcription	Colon Smooth Muscle	Colon
10	chr6:56144000-56144400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr6:56144000-56144600	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr6:56144000-56144600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr6:56144200-56144600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr6:56144200-56145000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr6:56144200-56145000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr6:56144200-56145400	Flanking Active TSS	A549	lung

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