Variant report

Variant	rs9382603
Chromosome Location	chr6:56144971-56144972
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr6:56143969-56144978	SK-N-SH	brain:	n/a	chr6:56144638-56144649
2	SP1	chr6:56144129-56145053	A549	lung:	n/a	n/a
3	JUND	chr6:56144376-56144980	HCT-116	colon:	n/a	chr6:56144413-56144423 chr6:56144412-56144424 chr6:56144413-56144423 chr6:56144413-56144423 chr6:56144736-56144747 chr6:56144414-56144422 chr6:56144413-56144423
4	GATA3	chr6:56143983-56144977	SK-N-SH	brain:	n/a	chr6:56144638-56144649
5	SP1	chr6:56144277-56145126	HCT-116	colon:	n/a	n/a
6	FOSL1	chr6:56144314-56145071	HCT-116	colon:	n/a	chr6:56144413-56144423 chr6:56144412-56144424 chr6:56144413-56144423 chr6:56144413-56144423 chr6:56144414-56144422 chr6:56144413-56144423
7	SP1	chr6:56144124-56145013	A549	lung:	n/a	n/a
8	TCF12	chr6:56143986-56145086	A549	lung:	n/a	n/a
9	EP300	chr6:56144343-56144992	A549	lung:	n/a	n/a
10	CBX3	chr6:56144388-56145048	HCT-116	colon:	n/a	n/a
11	STAT3	chr6:56144949-56145042	MCF10A-Er-Src	breast:	n/a	n/a
12	FOSL2	chr6:56144135-56145053	A549	lung:	n/a	chr6:56144413-56144423 chr6:56144412-56144424 chr6:56144413-56144423 chr6:56144413-56144423 chr6:56144414-56144422 chr6:56144413-56144423
13	EP300	chr6:56144194-56145104	A549	lung:	n/a	n/a
14	GATA3	chr6:56144007-56145142	A549	lung:	n/a	chr6:56144638-56144649
15	TCF12	chr6:56144009-56144983	SK-N-SH	brain:	n/a	n/a
16	FOS	chr6:56144388-56144990	HUVEC	blood vessel:	n/a	chr6:56144413-56144423 chr6:56144412-56144424 chr6:56144413-56144423 chr6:56144413-56144423 chr6:56144414-56144422 chr6:56144736-56144747 chr6:56144413-56144423

Variant related genes	Relation type
ENSG00000219095	TF binding region

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10498810	0.80[ASN][1000 genomes]
rs10948981	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12525967	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12530020	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12665485	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1925158	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1925160	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1925187	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1925188	0.82[ASN][1000 genomes]
rs2328693	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2397210	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2397212	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2397213	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3846927	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3846928	0.80[ASN][1000 genomes]
rs3846929	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3846931	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4119562	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4119563	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4712121	0.80[ASN][1000 genomes]
rs4715602	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4715603	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55734123	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66796842	0.84[ASN][1000 genomes]
rs67454631	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72645374	0.84[ASN][1000 genomes]
rs7745111	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7759570	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9349807	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9349809	0.81[ASN][1000 genomes]
rs9370495	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9382597	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9382599	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9382601	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9382604	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9396185	0.80[ASN][1000 genomes]
rs994040	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56142600-56145000	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr6:56143400-56145200	Weak transcription	Fetal Muscle Leg	muscle
3	chr6:56143600-56145400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:56143600-56156200	Weak transcription	Fetal Lung	lung
5	chr6:56143800-56156200	Weak transcription	Colon Smooth Muscle	Colon
6	chr6:56144200-56145000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr6:56144200-56145000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr6:56144200-56145400	Flanking Active TSS	A549	lung
9	chr6:56144400-56145200	Enhancers	Fetal Intestine Small	intestine
10	chr6:56144600-56145000	Enhancers	Fetal Kidney	kidney
11	chr6:56144800-56145200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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