Variant report

Variant	rs66796842
Chromosome Location	chr6:56142520-56142521
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10498810	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10948981	0.80[ASN][1000 genomes]
rs10948988	0.86[AMR][1000 genomes]
rs12525967	0.82[ASN][1000 genomes]
rs12526228	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1925160	0.80[ASN][1000 genomes]
rs1925187	0.82[ASN][1000 genomes]
rs1925188	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2328693	0.80[ASN][1000 genomes]
rs2397210	0.82[ASN][1000 genomes]
rs2397212	0.84[ASN][1000 genomes]
rs2397213	0.84[ASN][1000 genomes]
rs3807013	0.83[ASN][1000 genomes]
rs3846927	0.80[ASN][1000 genomes]
rs3846928	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3846929	0.80[ASN][1000 genomes]
rs3846931	0.80[ASN][1000 genomes]
rs4119562	0.80[ASN][1000 genomes]
rs4119563	0.80[ASN][1000 genomes]
rs4236138	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4435945	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4712121	0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4715602	0.82[ASN][1000 genomes]
rs4715603	0.82[ASN][1000 genomes]
rs4715606	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55734123	0.82[ASN][1000 genomes]
rs60619715	0.86[AMR][1000 genomes]
rs67454631	0.82[ASN][1000 genomes]
rs72645373	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72645374	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7745111	0.84[ASN][1000 genomes]
rs7759570	0.82[ASN][1000 genomes]
rs9349807	0.84[ASN][1000 genomes]
rs9349809	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9370495	0.82[ASN][1000 genomes]
rs9370506	0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9370511	0.86[AMR][1000 genomes]
rs9370513	0.86[AMR][1000 genomes]
rs9382597	0.82[ASN][1000 genomes]
rs9382599	0.82[ASN][1000 genomes]
rs9382600	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9382601	0.81[ASN][1000 genomes]
rs9382603	0.84[ASN][1000 genomes]
rs9382604	0.84[ASN][1000 genomes]
rs9382606	0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9382617	0.84[AMR][1000 genomes]
rs9396185	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs994039	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885911	chr6:55789704-56143231	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56137000-56143000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr6:56139000-56142800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr6:56141000-56143400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:56142000-56142600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:56142000-56144000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr6:56142400-56143800	Enhancers	iPS-20b Cell Line	embryonic stem cell

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