Variant report

Variant	rs72645373
Chromosome Location	chr6:56125689-56125690
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10498810	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10948988	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs12526228	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1925188	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3807013	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs3846928	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4435945	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs4712121	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60619715	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs66796842	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72645374	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9349809	0.84[ASN][1000 genomes]
rs9370494	0.81[EUR][1000 genomes]
rs9370511	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs9370513	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs9382600	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9382606	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9396185	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs994039	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885911	chr6:55789704-56143231	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56120800-56129800	Weak transcription	Aorta	Aorta
2	chr6:56123800-56126200	Enhancers	Fetal Stomach	stomach
3	chr6:56125000-56125800	Enhancers	Fetal Brain Male	brain
4	chr6:56125000-56127600	Weak transcription	Fetal Kidney	kidney
5	chr6:56125000-56127800	Weak transcription	HSMM	muscle
6	chr6:56125000-56128200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:56125200-56127200	Weak transcription	Fetal Muscle Leg	muscle
8	chr6:56125200-56127600	Weak transcription	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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