Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs17059212	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1815602	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1933772	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1933773	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2209147	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2326913	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4897439	0.82[EUR][1000 genomes]
rs56019502	0.82[EUR][1000 genomes]
rs62431563	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62431565	0.82[EUR][1000 genomes]
rs62431566	0.80[EUR][1000 genomes]
rs6903831	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6904870	0.94[ASN][1000 genomes]
rs72988212	0.82[EUR][1000 genomes]
rs7451336	0.82[EUR][1000 genomes]
rs7452034	0.82[EUR][1000 genomes]
rs7754423	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9375723	0.92[ASN][1000 genomes]
rs9385545	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9385546	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9388799	0.91[ASN][1000 genomes]
rs9402237	0.88[ASN][1000 genomes]
rs9402238	0.96[ASN][1000 genomes]
rs946300	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9492633	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533971	chr6:130490694-131172051	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:130847600-130851200	Weak transcription	Fetal Muscle Leg	muscle
2	chr6:130848600-130855400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr6:130848800-130856200	Weak transcription	NHEK	skin
4	chr6:130850200-130851400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:130850600-130851200	Enhancers	Primary B cells from peripheral blood	blood
6	chr6:130850800-130851200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr6:130851000-130851400	Enhancers	H1 Cell Line	embryonic stem cell
8	chr6:130851000-130851400	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr6:130851000-130851400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr6:130851000-130851400	Enhancers	HMEC	breast

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