Variant report

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10499213	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs11962730	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs11965819	0.93[ASN][1000 genomes]
rs12662206	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs12664473	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs17069373	0.94[CHB][hapmap];0.94[JPT][hapmap];0.98[ASN][1000 genomes]
rs2096283	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs2096284	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs4568471	0.98[ASN][1000 genomes]
rs4896488	0.93[ASN][1000 genomes]
rs60052799	0.93[ASN][1000 genomes]
rs60350063	0.81[EUR][1000 genomes]
rs6901783	0.85[ASN][1000 genomes]
rs6904036	0.98[ASN][1000 genomes]
rs6911905	0.93[ASN][1000 genomes]
rs6926194	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6933318	0.85[ASN][1000 genomes]
rs6933569	0.93[ASN][1000 genomes]
rs73558032	0.81[EUR][1000 genomes]
rs73775693	0.93[ASN][1000 genomes]
rs7772473	0.93[ASN][1000 genomes]
rs7772713	0.91[ASN][1000 genomes]
rs7776193	0.92[ASN][1000 genomes]
rs9373247	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs9373248	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs9376463	0.85[ASN][1000 genomes]
rs9376464	0.92[ASN][1000 genomes]
rs9385879	0.94[CHB][hapmap];0.94[JPT][hapmap];0.97[ASN][1000 genomes]
rs9389723	0.99[ASN][1000 genomes]
rs9399293	0.93[ASN][1000 genomes]
rs9403124	0.94[CHB][hapmap];0.94[JPT][hapmap];0.97[ASN][1000 genomes]
rs9403125	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv830820	chr6:140059279-140255292	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
3	nsv1017015	chr6:140084137-140300565	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1019407	chr6:140087307-140304334	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1022881	chr6:140098646-140172570	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
6	nsv886692	chr6:140111650-140155090	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140125400-140127000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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