Variant report

No.	Distal block	Cell Line	Cell type
1	chr6:139694026..139696985-chr6:140124355..140126550,2	K562	blood:
2	chr6:139694287..139696985-chr6:140124308..140125855,2	K562	blood:
3	chr6:140123522..140126295-chr6:140134268..140137009,2	K562	blood:

Variant related genes	Relation type
ENSG00000164442	Chromatin interaction

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11965819	0.95[ASN][1000 genomes]
rs17069373	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4568471	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4896488	0.95[ASN][1000 genomes]
rs60052799	0.95[ASN][1000 genomes]
rs6901783	0.84[ASN][1000 genomes]
rs6904036	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6911905	0.95[ASN][1000 genomes]
rs6926194	0.97[ASN][1000 genomes]
rs6933318	0.84[ASN][1000 genomes]
rs6933569	0.95[ASN][1000 genomes]
rs73775693	0.95[ASN][1000 genomes]
rs7772473	0.95[ASN][1000 genomes]
rs7772713	0.92[ASN][1000 genomes]
rs7776193	0.93[ASN][1000 genomes]
rs9376463	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9376464	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9376466	0.97[ASN][1000 genomes]
rs9385876	0.80[CEU][hapmap]
rs9389723	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9399293	0.94[ASN][1000 genomes]
rs9403124	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9403125	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv830820	chr6:140059279-140255292	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
3	nsv1017015	chr6:140084137-140300565	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1019407	chr6:140087307-140304334	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1022881	chr6:140098646-140172570	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
6	nsv886692	chr6:140111650-140155090	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140125200-140126200	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr6:140125400-140126800	ZNF genes & repeats	Fetal Intestine Small	intestine
3	chr6:140125400-140127000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

Quick Search: