Variant report

Variant	rs6933318
Chromosome Location	chr6:140096450-140096451
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:140018170..140021108-chr6:140096378..140098271,2	MCF-7	breast:
2	chr6:140081802..140083701-chr6:140096060..140098267,2	K562	blood:
3	chr6:140093234..140095381-chr6:140096123..140098454,2	MCF-7	breast:
4	chr6:139694049..139695787-chr6:140096448..140099243,2	K562	blood:

Variant related genes	Relation type
ENSG00000164442	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10499213	0.94[JPT][hapmap]
rs10499214	0.82[EUR][1000 genomes]
rs11962730	0.94[JPT][hapmap]
rs11964275	1.00[CEU][hapmap];0.94[JPT][hapmap];0.82[EUR][1000 genomes]
rs11965819	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12055436	0.81[JPT][hapmap]
rs12055472	0.81[JPT][hapmap]
rs12662206	0.94[JPT][hapmap]
rs12664473	0.87[JPT][hapmap]
rs17069206	0.81[JPT][hapmap]
rs17069225	0.81[JPT][hapmap]
rs17069373	0.83[ASN][1000 genomes]
rs1936214	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2096283	0.94[JPT][hapmap]
rs2096284	0.94[JPT][hapmap]
rs2154032	1.00[CEU][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4520026	0.82[EUR][1000 genomes]
rs4568471	0.83[ASN][1000 genomes]
rs4896488	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55966840	0.83[EUR][1000 genomes]
rs60052799	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6570374	0.94[CEU][hapmap];0.94[JPT][hapmap];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6901783	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6904036	0.83[ASN][1000 genomes]
rs6905478	0.94[CEU][hapmap];0.88[JPT][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6911905	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6926194	0.85[ASN][1000 genomes]
rs6933569	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73775693	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7743796	0.83[EUR][1000 genomes]
rs7752001	0.81[JPT][hapmap]
rs7756866	0.83[EUR][1000 genomes]
rs7769567	0.82[EUR][1000 genomes]
rs7772473	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7772713	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7774968	1.00[CEU][hapmap];0.94[JPT][hapmap];0.82[EUR][1000 genomes]
rs7776193	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9373246	0.81[JPT][hapmap]
rs9373247	0.94[JPT][hapmap]
rs9373248	0.93[JPT][hapmap]
rs9376452	0.81[JPT][hapmap]
rs9376463	0.98[ASN][1000 genomes]
rs9376464	0.89[ASN][1000 genomes]
rs9376466	0.85[ASN][1000 genomes]
rs9385874	1.00[CEU][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9385875	0.82[EUR][1000 genomes]
rs9385876	0.94[JPT][hapmap]
rs9385879	0.84[ASN][1000 genomes]
rs9389717	0.94[JPT][hapmap]
rs9389723	0.84[ASN][1000 genomes]
rs9399292	0.81[JPT][hapmap]
rs9399293	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9403114	0.81[EUR][1000 genomes]
rs9403115	1.00[CEU][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes]
rs9403116	0.93[JPT][hapmap]
rs9403124	0.82[ASN][1000 genomes]
rs9403125	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv830820	chr6:140059279-140255292	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
3	nsv1017015	chr6:140084137-140300565	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1019407	chr6:140087307-140304334	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140086000-140099400	Weak transcription	Ovary	ovary
2	chr6:140086000-140101000	Weak transcription	Left Ventricle	heart
3	chr6:140086400-140097000	Weak transcription	Fetal Heart	heart
4	chr6:140087400-140099200	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr6:140087800-140098600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr6:140088200-140100000	Weak transcription	NHDF-Ad	bronchial
7	chr6:140093000-140097000	Weak transcription	Fetal Lung	lung
8	chr6:140093000-140097200	Weak transcription	Fetal Kidney	kidney
9	chr6:140093200-140096800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr6:140096200-140096800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:140096200-140098000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr6:140096200-140100800	Enhancers	K562	blood
13	chr6:140096400-140096600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr6:140096400-140096800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr6:140096400-140098000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr6:140096400-140099000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr6:140096400-140100200	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr6:140096400-140100200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr6:140096400-140100400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr6:140096400-140100400	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr6:140096400-140100800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links