Variant report

Variant	rs7769567
Chromosome Location	chr6:140077127-140077128
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10499213	0.97[ASN][1000 genomes]
rs10499214	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11962730	0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11963532	0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11964275	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11965819	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12055436	0.86[ASN][1000 genomes]
rs12055472	0.86[ASN][1000 genomes]
rs12055843	0.86[ASN][1000 genomes]
rs12662206	0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12664473	0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs17069225	0.86[ASN][1000 genomes]
rs1936210	0.83[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs1936214	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2096283	0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2096284	0.97[ASN][1000 genomes]
rs2154032	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2185923	0.87[ASN][1000 genomes]
rs2327993	0.87[ASN][1000 genomes]
rs4520026	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4535566	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55764205	0.86[ASN][1000 genomes]
rs55966840	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60350063	0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs60758082	0.86[ASN][1000 genomes]
rs6570372	0.89[ASN][1000 genomes]
rs6570373	0.88[ASN][1000 genomes]
rs6570374	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6901783	0.82[EUR][1000 genomes]
rs6905478	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6911905	0.80[AMR][1000 genomes]
rs6933318	0.82[EUR][1000 genomes]
rs6933569	0.82[AMR][1000 genomes]
rs73556090	0.87[ASN][1000 genomes]
rs73558032	0.97[ASN][1000 genomes]
rs73775693	0.80[AMR][1000 genomes]
rs7743796	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7752001	0.87[ASN][1000 genomes]
rs7752323	0.83[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs7756866	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7772473	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7774968	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7776193	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9321752	0.85[ASN][1000 genomes]
rs9373246	0.87[ASN][1000 genomes]
rs9373247	0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9373248	0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9376457	0.89[ASN][1000 genomes]
rs9385874	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9385875	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9385876	0.97[ASN][1000 genomes]
rs9389715	0.83[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs9389717	0.95[ASN][1000 genomes]
rs9403113	0.81[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs9403114	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9403115	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9403116	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv464065	chr6:140027836-140085873	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv604766	chr6:140027836-140085873	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv830820	chr6:140059279-140255292	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140070200-140085200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr6:140071800-140079200	Enhancers	Osteobl	bone
3	chr6:140072200-140077400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:140072400-140079200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr6:140073000-140089400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:140073400-140079200	Enhancers	Muscle Satellite Cultured Cells	--
7	chr6:140074000-140079400	Weak transcription	Aorta	Aorta
8	chr6:140074400-140078600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:140074800-140078200	Weak transcription	Psoas Muscle	Psoas
10	chr6:140075000-140083200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr6:140075000-140085400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr6:140075200-140083800	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr6:140075600-140081200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr6:140075800-140077200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr6:140075800-140077400	Enhancers	Fetal Intestine Small	intestine
16	chr6:140075800-140077400	Enhancers	Ovary	ovary
17	chr6:140075800-140077400	Enhancers	Pancreas	Pancrea
18	chr6:140075800-140077600	Enhancers	Adipose Nuclei	Adipose
19	chr6:140075800-140077600	Enhancers	Fetal Intestine Large	intestine
20	chr6:140076000-140077200	Enhancers	Rectal Smooth Muscle	rectum
21	chr6:140076000-140077400	Enhancers	Colon Smooth Muscle	Colon
22	chr6:140076000-140085200	Weak transcription	Left Ventricle	heart
23	chr6:140076200-140077200	Enhancers	Primary monocytes fromperipheralblood	blood
24	chr6:140076200-140078200	Enhancers	HUVEC	blood vessel
25	chr6:140076200-140078800	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr6:140076400-140079200	Enhancers	NHDF-Ad	bronchial
27	chr6:140076400-140081800	Weak transcription	Right Atrium	heart
28	chr6:140076400-140082200	Weak transcription	K562	blood
29	chr6:140076400-140085000	Weak transcription	Fetal Muscle Leg	muscle
30	chr6:140076400-140085200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr6:140076600-140078800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr6:140076800-140077400	Enhancers	HepG2	liver
33	chr6:140076800-140077600	Enhancers	Skeletal Muscle Male	skeletal muscle
34	chr6:140076800-140077600	Enhancers	Skeletal Muscle Female	skeletal muscle
35	chr6:140076800-140077800	Weak transcription	HSMM	muscle
36	chr6:140076800-140078400	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr6:140076800-140078600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr6:140076800-140078800	Weak transcription	Monocytes-CD14+_RO01746	blood
39	chr6:140076800-140078800	Weak transcription	NHLF	lung
40	chr6:140076800-140079000	Weak transcription	Fetal Heart	heart
41	chr6:140076800-140079400	Weak transcription	A549	lung
42	chr6:140076800-140081800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr6:140076800-140083200	Weak transcription	Fetal Lung	lung
44	chr6:140076800-140083400	Weak transcription	HSMMtube	muscle
45	chr6:140076800-140085000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr6:140076800-140085200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr6:140077000-140077400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr6:140077000-140077400	Enhancers	Fetal Muscle Trunk	muscle
49	chr6:140077000-140079200	Weak transcription	Liver	Liver
50	chr6:140077000-140083400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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