Variant report

Variant	rs9373246
Chromosome Location	chr6:140051367-140051368
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:139695264..139697113-chr6:140050690..140053186,2	K562	blood:
2	chr6:140049643..140051966-chr6:140056396..140059312,2	K562	blood:
3	chr6:139695095..139697021-chr6:140050621..140053799,3	K562	blood:

Variant related genes	Relation type
ENSG00000164442	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10499212	0.82[CHB][hapmap]
rs10499213	0.84[CHB][hapmap];0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs10499214	0.89[ASN][1000 genomes]
rs11962730	0.82[CHB][hapmap];0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs11963532	0.89[ASN][1000 genomes]
rs11964275	0.82[CHB][hapmap];0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs12055436	0.87[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12055472	0.85[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12055843	0.97[ASN][1000 genomes]
rs12662206	0.84[CHB][hapmap];0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs12664473	0.84[CHB][hapmap];0.81[JPT][hapmap];0.89[ASN][1000 genomes]
rs17069206	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17069225	0.93[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1891808	0.86[ASN][1000 genomes]
rs1936210	0.98[ASN][1000 genomes]
rs1936214	0.89[ASN][1000 genomes]
rs2096283	0.84[CHB][hapmap];0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs2096284	0.82[CHB][hapmap];0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs2154032	0.82[CHB][hapmap];0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs2185923	0.96[ASN][1000 genomes]
rs2327993	0.96[ASN][1000 genomes]
rs4520026	0.89[ASN][1000 genomes]
rs55764205	0.97[ASN][1000 genomes]
rs55966840	0.89[ASN][1000 genomes]
rs60350063	0.89[ASN][1000 genomes]
rs60758082	0.97[ASN][1000 genomes]
rs60870127	0.87[ASN][1000 genomes]
rs6570372	0.98[ASN][1000 genomes]
rs6570373	0.99[ASN][1000 genomes]
rs6570374	0.82[CHB][hapmap];0.88[JPT][hapmap];0.87[ASN][1000 genomes]
rs6901783	0.81[JPT][hapmap]
rs6905478	0.82[CHB][hapmap];0.82[JPT][hapmap];0.89[ASN][1000 genomes]
rs6933318	0.81[JPT][hapmap]
rs73556090	0.96[ASN][1000 genomes]
rs73558032	0.89[ASN][1000 genomes]
rs7743796	0.89[ASN][1000 genomes]
rs7752001	0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7752323	0.98[ASN][1000 genomes]
rs7756866	0.89[ASN][1000 genomes]
rs7769567	0.87[ASN][1000 genomes]
rs7774968	0.84[CHB][hapmap];0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs9321752	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9373247	0.84[CHB][hapmap];0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs9373248	0.83[CHB][hapmap];0.86[JPT][hapmap];0.89[ASN][1000 genomes]
rs9376452	0.80[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs9376457	0.98[ASN][1000 genomes]
rs9376463	0.83[AMR][1000 genomes]
rs9376464	0.83[AMR][1000 genomes]
rs9385874	0.84[CHB][hapmap];0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs9385875	0.89[ASN][1000 genomes]
rs9385876	0.88[CEU][hapmap];0.89[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9389715	0.98[ASN][1000 genomes]
rs9389717	0.87[CEU][hapmap];0.81[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9399292	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9403113	0.96[ASN][1000 genomes]
rs9403114	0.89[ASN][1000 genomes]
rs9403115	0.84[CHB][hapmap];0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs9403116	0.88[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv516840	chr6:139960833-140053704	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv464065	chr6:140027836-140085873	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv604766	chr6:140027836-140085873	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140050400-140051800	Enhancers	Rectal Smooth Muscle	rectum
2	chr6:140050400-140051800	Enhancers	Stomach Smooth Muscle	stomach
3	chr6:140050400-140054000	Weak transcription	Ovary	ovary
4	chr6:140051000-140051600	Enhancers	Colon Smooth Muscle	Colon
5	chr6:140051200-140051800	Enhancers	Duodenum Smooth Muscle	Duodenum

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