Variant report

Variant	rs11963532
Chromosome Location	chr6:140065418-140065419
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:140059888..140061775-chr6:140062936..140065561,3	MCF-7	breast:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10499213	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10499214	0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11962730	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11964275	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12055436	0.82[CHB][hapmap];0.88[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs12055472	0.81[CHB][hapmap];0.88[JPT][hapmap];0.88[ASN][1000 genomes]
rs12055843	0.87[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs12662206	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12664473	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17069206	0.88[JPT][hapmap]
rs17069225	0.88[CHB][hapmap];0.88[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs1891808	0.83[AFR][1000 genomes]
rs1936210	0.89[ASN][1000 genomes]
rs1936214	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2096283	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2096284	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2154032	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2185923	0.88[ASN][1000 genomes]
rs2327993	0.88[ASN][1000 genomes]
rs4520026	0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4535566	0.86[ASN][1000 genomes]
rs55764205	0.87[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs55966840	0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs60350063	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60758082	0.88[ASN][1000 genomes]
rs6570372	0.89[ASN][1000 genomes]
rs6570373	0.90[ASN][1000 genomes]
rs6570374	0.89[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs6901783	0.94[JPT][hapmap]
rs6905478	1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6933318	0.94[JPT][hapmap]
rs73556090	0.88[ASN][1000 genomes]
rs73558032	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7743796	0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7752001	0.89[CHB][hapmap];0.88[JPT][hapmap];0.88[ASN][1000 genomes]
rs7752323	0.89[ASN][1000 genomes]
rs7756866	0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7769567	0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7774968	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs9321752	0.88[ASN][1000 genomes]
rs9373246	0.84[CHB][hapmap];0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs9373247	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9373248	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9376452	0.88[JPT][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes]
rs9376457	0.89[ASN][1000 genomes]
rs9385874	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs9385875	0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs9385876	0.94[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs9389715	0.89[ASN][1000 genomes]
rs9389717	0.88[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs9399292	0.88[JPT][hapmap]
rs9403113	0.88[ASN][1000 genomes]
rs9403114	0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs9403115	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs9403116	0.94[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv464065	chr6:140027836-140085873	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv604766	chr6:140027836-140085873	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv830820	chr6:140059279-140255292	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140054800-140072000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr6:140062800-140065800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr6:140063400-140066600	Enhancers	NHDF-Ad	bronchial
4	chr6:140063600-140066200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:140063600-140067200	Weak transcription	Rectal Smooth Muscle	rectum
6	chr6:140063800-140066000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr6:140063800-140066000	Enhancers	HSMM	muscle
8	chr6:140063800-140066400	Enhancers	NHLF	lung
9	chr6:140063800-140069000	Weak transcription	Fetal Heart	heart
10	chr6:140064000-140065800	Enhancers	NH-A	brain
11	chr6:140064000-140065800	Enhancers	Osteobl	bone
12	chr6:140064000-140066600	Enhancers	HUVEC	blood vessel
13	chr6:140064200-140065600	Weak transcription	Colon Smooth Muscle	Colon
14	chr6:140064200-140065600	Enhancers	HMEC	breast
15	chr6:140064200-140065600	Enhancers	NHEK	skin
16	chr6:140064200-140066200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr6:140064200-140066400	Enhancers	Fetal Kidney	kidney
18	chr6:140064200-140066600	Enhancers	Fetal Intestine Small	intestine
19	chr6:140064200-140068400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr6:140064400-140065600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr6:140064400-140065600	Enhancers	Stomach Mucosa	stomach
22	chr6:140064400-140066200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr6:140064400-140066600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr6:140064400-140070000	Enhancers	Fetal Intestine Large	intestine
25	chr6:140064800-140069200	Weak transcription	HSMMtube	muscle
26	chr6:140065400-140065800	Enhancers	Muscle Satellite Cultured Cells	--
27	chr6:140065400-140065800	Enhancers	Adipose Nuclei	Adipose
28	chr6:140065400-140066400	Enhancers	A549	lung
29	chr6:140065400-140068200	Weak transcription	Ovary	ovary
30	chr6:140065400-140068200	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr6:140065400-140069200	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr6:140065400-140069400	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr6:140065400-140069400	Weak transcription	Hela-S3	cervix
34	chr6:140065400-140069600	Weak transcription	Duodenum Mucosa	Duodenum
35	chr6:140065400-140071800	Weak transcription	HepG2	liver

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