Variant report

Variant	rs73556090
Chromosome Location	chr6:140021459-140021460
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10499213	0.88[ASN][1000 genomes]
rs10499214	0.89[ASN][1000 genomes]
rs11962730	0.88[ASN][1000 genomes]
rs11963532	0.88[ASN][1000 genomes]
rs11964275	0.89[ASN][1000 genomes]
rs12055436	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12055472	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12055843	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12662206	0.88[ASN][1000 genomes]
rs12664473	0.88[ASN][1000 genomes]
rs17069206	0.81[ASN][1000 genomes]
rs17069225	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1891808	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1936210	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1936214	0.89[ASN][1000 genomes]
rs2096283	0.88[ASN][1000 genomes]
rs2096284	0.88[ASN][1000 genomes]
rs2154032	0.89[ASN][1000 genomes]
rs2185923	0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2327993	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4520026	0.89[ASN][1000 genomes]
rs55764205	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55966840	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs60350063	0.88[ASN][1000 genomes]
rs60758082	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60870127	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6570372	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6570373	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6570374	0.87[ASN][1000 genomes]
rs6905478	0.89[ASN][1000 genomes]
rs73558032	0.88[ASN][1000 genomes]
rs7743796	0.89[ASN][1000 genomes]
rs7752001	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7752323	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7756866	0.89[ASN][1000 genomes]
rs7769567	0.87[ASN][1000 genomes]
rs7774968	0.89[ASN][1000 genomes]
rs9321752	0.98[ASN][1000 genomes]
rs9373246	0.96[ASN][1000 genomes]
rs9373247	0.88[ASN][1000 genomes]
rs9373248	0.88[ASN][1000 genomes]
rs9376452	0.90[ASN][1000 genomes]
rs9376457	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9385874	0.89[ASN][1000 genomes]
rs9385875	0.89[ASN][1000 genomes]
rs9385876	0.87[ASN][1000 genomes]
rs9389715	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9389717	0.85[ASN][1000 genomes]
rs9399292	0.89[ASN][1000 genomes]
rs9403113	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9403114	0.89[ASN][1000 genomes]
rs9403115	0.89[ASN][1000 genomes]
rs9403116	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv516840	chr6:139960833-140053704	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv823851	chr6:140019537-140024421	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140019600-140022000	Enhancers	Fetal Kidney	kidney
2	chr6:140019600-140022600	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr6:140020200-140021800	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr6:140020600-140021600	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr6:140020800-140021800	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr6:140021000-140022600	Enhancers	Sigmoid Colon	Sigmoid Colon
7	chr6:140021200-140022200	Weak transcription	NHDF-Ad	bronchial
8	chr6:140021400-140023000	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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