Variant report

Variant	rs7774968
Chromosome Location	chr6:140085295-140085296
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:140081301..140083675-chr6:140083815..140085974,2	MCF-7	breast:
2	chr6:140028951..140031620-chr6:140084219..140086898,2	K562	blood:
3	chr6:140055856..140059094-chr6:140083948..140086975,3	K562	blood:
4	chr6:139694058..139697860-chr6:140083167..140088670,5	MCF-7	breast:
5	chr6:140077496..140081190-chr6:140083108..140086275,5	K562	blood:

Variant related genes	Relation type
ENSG00000164442	Chromatin interaction

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10499213	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs10499214	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11962730	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11963532	0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11964275	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11965819	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12055436	0.82[CHB][hapmap];0.88[JPT][hapmap];0.88[ASN][1000 genomes]
rs12055472	0.81[CHB][hapmap];0.88[JPT][hapmap];0.88[ASN][1000 genomes]
rs12055843	0.88[ASN][1000 genomes]
rs12662206	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12664473	1.00[CHB][hapmap];0.94[JPT][hapmap];0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs17069206	0.88[JPT][hapmap]
rs17069225	0.88[CHB][hapmap];0.88[JPT][hapmap];0.88[ASN][1000 genomes]
rs1936210	0.81[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs1936214	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2096283	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2096284	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2154032	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2185923	0.89[ASN][1000 genomes]
rs2327993	0.89[ASN][1000 genomes]
rs4520026	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4535566	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55764205	0.88[ASN][1000 genomes]
rs55966840	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60350063	0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs60758082	0.88[ASN][1000 genomes]
rs60870127	0.80[ASN][1000 genomes]
rs6570372	0.90[ASN][1000 genomes]
rs6570373	0.89[ASN][1000 genomes]
rs6570374	0.94[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6901783	1.00[CEU][hapmap];0.94[JPT][hapmap];0.82[EUR][1000 genomes]
rs6905478	0.94[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6911905	0.80[AMR][1000 genomes]
rs6933318	1.00[CEU][hapmap];0.94[JPT][hapmap];0.82[EUR][1000 genomes]
rs6933569	0.82[AMR][1000 genomes]
rs73556090	0.89[ASN][1000 genomes]
rs73558032	0.99[ASN][1000 genomes]
rs73775693	0.80[AMR][1000 genomes]
rs7743796	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7752001	0.89[CHB][hapmap];0.88[JPT][hapmap];0.89[YRI][hapmap];0.89[ASN][1000 genomes]
rs7752323	0.81[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs7756866	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7769567	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7772473	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7776193	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9321752	0.87[ASN][1000 genomes]
rs9373246	0.84[CHB][hapmap];0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs9373247	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs9373248	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs9376452	0.88[JPT][hapmap]
rs9376457	0.90[ASN][1000 genomes]
rs9385874	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9385875	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9385876	0.94[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs9389715	0.81[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs9389717	0.88[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs9399292	0.88[JPT][hapmap]
rs9403113	0.89[ASN][1000 genomes]
rs9403114	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9403115	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9403116	0.94[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv464065	chr6:140027836-140085873	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv604766	chr6:140027836-140085873	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv830820	chr6:140059279-140255292	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
5	nsv1017015	chr6:140084137-140300565	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140073000-140089400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:140075000-140085400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr6:140077000-140085800	Weak transcription	Fetal Kidney	kidney
4	chr6:140077400-140085800	Weak transcription	Pancreas	Pancrea
5	chr6:140079600-140085400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:140079800-140090400	Weak transcription	Aorta	Aorta
7	chr6:140081200-140085400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr6:140081400-140085600	Weak transcription	Ovary	ovary
9	chr6:140082400-140085600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr6:140082400-140089400	Weak transcription	Psoas Muscle	Psoas
11	chr6:140083000-140086600	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr6:140083200-140085400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:140083200-140085800	Enhancers	NHDF-Ad	bronchial
14	chr6:140083200-140086400	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr6:140083200-140086400	Enhancers	Fetal Heart	heart
16	chr6:140083200-140087400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr6:140083200-140088200	Enhancers	HSMM	muscle
18	chr6:140083400-140085400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr6:140083400-140085400	Enhancers	Muscle Satellite Cultured Cells	--
20	chr6:140083400-140088200	Enhancers	HSMMtube	muscle
21	chr6:140083400-140090200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr6:140083600-140085800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr6:140083600-140086200	Enhancers	Primary neutrophils fromperipheralblood	blood
24	chr6:140083600-140087800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr6:140083600-140087800	Enhancers	Hela-S3	cervix
26	chr6:140083600-140087800	Enhancers	HUVEC	blood vessel
27	chr6:140083600-140088200	Enhancers	K562	blood
28	chr6:140083800-140085800	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr6:140083800-140085800	Enhancers	Skeletal Muscle Male	skeletal muscle
30	chr6:140083800-140087600	Enhancers	NH-A	brain
31	chr6:140083800-140087800	Enhancers	NHLF	lung
32	chr6:140084000-140089400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr6:140084200-140085600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr6:140084200-140085800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr6:140084200-140086200	Enhancers	HUES48 Cell Line	embryonic stem cell
36	chr6:140084400-140085600	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr6:140084600-140085800	Enhancers	Primary hematopoietic stem cells short term culture	blood
38	chr6:140084600-140087600	Enhancers	HMEC	breast
39	chr6:140084800-140086000	Weak transcription	Primary B cells from cord blood	blood
40	chr6:140085000-140085400	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr6:140085000-140085600	Enhancers	Skeletal Muscle Female	skeletal muscle
42	chr6:140085000-140085800	Enhancers	Breast Myoepithelial Primary Cells	Breast
43	chr6:140085000-140085800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr6:140085000-140085800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr6:140085000-140086000	Enhancers	Fetal Muscle Leg	muscle
46	chr6:140085000-140086400	Enhancers	Adipose Nuclei	Adipose
47	chr6:140085000-140086400	Enhancers	Fetal Lung	lung
48	chr6:140085000-140086400	Enhancers	Fetal Stomach	stomach
49	chr6:140085000-140087200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr6:140085000-140087600	Enhancers	Rectal Smooth Muscle	rectum

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